1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tcttagcttacgaatgttgggagccaaaacttttagagcgctggcccaataatctcctacatggggctctagataatgacaaatgaactcttcaaaacagATTTCTGGGCAAGATAAGCCCTCGTCAGCAGCAATCACTCCCACATCAAATTCGTCCCTTGAACCAAAACCTCATCCTGTACCATTTAACAATATGGAAA
species | Vitis vinifera |
transcript | Vv18s0089g00220.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGCTATTCTCTGGCCTTGTGACACTGTACAATCGAACACTGAAATTTGCG ATTTCTGGGCAAGATAAGCCCTCGTCAGCAGCAATCACTCCCACATCAAATEST: gi|30133796|gb|CB919135.1|CB919135
genomic: AGCTATTCTCTGGCCTTGTGACACTGTACAATCGAACACTGAAATTTGCGgtgagacctc ... ttcaaaacagATTTCTGGGCAAGATAAGCCCTCGTCAGCAGCAATCACTCCCACATCAAAT
EST: AGCTATTCTCTGGCCTTGTGACACTGTACAATCGAACACTGAAATTTGCG ATTTCTGGGCAAGATAAGCCCTCGTCAGCAGCAATCACTCCCACATCAAAT
genomic: AGCTATTCTCTGGCCTTGTGACACTGTACAATCGAACACTGAAATTTGCGgtgagacctc ... ttcaaaacagATTTCTGGGCAAGATAAGCCCTCGTCAGCAGCAATCACTCCCACATCAAAT
ccaataatctcctacatggggctctagataatgacaaatgaactcttcaaaacagATTTCTGGGCAAGATAAGCCCTCGTCAGCAGCAATCACTCCCACATCAAATTCGTCCCTTGAACCAAAACCTCATCCTGTACCATTTAACAATATGGAAA
ctcttc CT-rich tract
tagataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttagcttacgaatgttgggagccaaaacttttagagcgctggcccaataatctcctacatggggctctagataatgacaaatgaactcttcaaaacagATTTCTGGGCAAGATAAGCCCTCGTCAGCAGCAATCACTCCCACATCAAATTCGTCCCTTGAACCAAAACCTCATCCTGTACCATTTAACAATATGGAAA
- - - - - - - tgttggg
- - - - - - - - - - - -ccaaaac
- - - - - - - - - - - - - - - - - - - - -tggccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgaa