1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
...gagaggctgatattaatggtcttatatgctgttgttttttcttaaaattttccttctttattattctttcccttaacatgagtttctgttgtattgacagGATAATAGACAATAAATCATTAAAGTTAATCACTGAGGCTTCAGAAAGCTCTCCAACCAAGGTTGCTAAGGATTATCCCGATGCTGTCCTTCGTG
species | Vitis vinifera |
transcript | Vv18s0072g00720.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTACAGTCCTTCCCTCGAGGCATGGAATGTATTGATCCACTGGGATTGGG GATAATAGACAATAAATCATTAAAGTTAATCACTGAGGCTTCAGAAAGCTCEST: gi|30327435|gb|CD010697.1|CD010697
genomic: TTACAGTCCTTCCCTCGAGGCATGGAATGTATTGATCCACTGGGATTGGGgtaggcttct ... gtattgacagGATAATAGACAATAAATCATTAAAGTTAATCACTGAGGCTTCAGAAAGCTC
EST: TTACAGTCCTTCCCTCGAGGCATGGAATGTATTGATCCACTGGGATTGGG GATAATAGACAATAAATCATTAAAGTTAATCACTGAGGCTTCAGAAAGCTCEST: gi|32248056|gb|CD713875.1|CD713875
genomic: TTACAGTCCTTCCCTCGAGGCATGGAATGTATTGATCCACTGGGATTGGGgtaggcttct ... gtattgacagGATAATAGACAATAAATCATTAAAGTTAATCACTGAGGCTTCAGAAAGCTC
EST: TTACAGTCCTTCCCTCGAGGCATGGAATGTATTGATCCACTGGGATTGGG GATAATAGACAATAAATCATTAAAGTTAATCACTGAGGCTTCAGAAAGCTCEST: gi|32272073|gb|CD721232.1|CD721232
genomic: TTACAGTCCTTCCCTCGAGGCATGGAATGTATTGATCCACTGGGATTGGGgtaggcttct ... gtattgacagGATAATAGACAATAAATCATTAAAGTTAATCACTGAGGCTTCAGAAAGCTC
EST: TTACAGTCCTTCCCTCGAGGCATGGAATGTATTGATCCACTGGGATTGGG GATAATAGACAATAAATCATTAAAGTTAATCACTGAGGCTTCAGAAAGCTCEST: gi|32272496|gb|CD721655.1|CD721655
genomic: TTACAGTCCTTCCCTCGAGGCATGGAATGTATTGATCCACTGGGATTGGGgtaggcttct ... gtattgacagGATAATAGACAATAAATCATTAAAGTTAATCACTGAGGCTTCAGAAAGCTC
EST: TTACAGTCCTTCCCTCGAGGCATGGAATGTATTGATCCACTGGGATTGGG GATAATAGACAATAAATCATTAAAGTTAATCACTGAGGCTTCAGAAAGCTCEST: gi|30326194|gb|CD009456.1|CD009456
genomic: TTACAGTCCTTCCCTCGAGGCATGGAATGTATTGATCCACTGGGATTGGGgtaggcttct ... gtattgacagGATAATAGACAATAAATCATTAAAGTTAATCACTGAGGCTTCAGAAAGCTC
EST: TTACAGTCCTTCCCTCGAGGCATGGAATGTATTGATCCACTGGGATTGGG GATAATAGACAATAAATCATTAAAGTTAATCACTGAGGCTTCAGAAAGCTCEST: gi|32248851|gb|CD714670.1|CD714670
genomic: TTACAGTCCTTCCCTCGAGGCATGGAATGTATTGATCCACTGGGATTGGGgtaggcttct ... gtattgacagGATAATAGACAATAAATCATTAAAGTTAATCACTGAGGCTTCAGAAAGCTC
EST: TTACAGTCCTTCCCTCGAGGCATGGAATGTATTGATCCACTGGGATTGGG GATAATAGACAATAAATCATTAAAGTTAATCACTGAGGCTTCAGAAAGCTCEST: gi|32249201|gb|CD715020.1|CD715020
genomic: TTACAGTCCTTCCCTCGAGGCATGGAATGTATTGATCCACTGGGATTGGGgtaggcttct ... gtattgacagGATAATAGACAATAAATCATTAAAGTTAATCACTGAGGCTTCAGAAAGCTC
EST: TTACAGTCCTTCCCTCGAGGCATGGAATGTATTGATCCACTGGGATTGGG GATAATAGACAATAAATCATTAAAGTTAATCACTGAGGCTTCAGAAAGCTC
genomic: TTACAGTCCTTCCCTCGAGGCATGGAATGTATTGATCCACTGGGATTGGGgtaggcttct ... gtattgacagGATAATAGACAATAAATCATTAAAGTTAATCACTGAGGCTTCAGAAAGCTC
aattttccttctttattattctttcccttaacatgagtttctgttgtattgacagGATAATAGACAATAAATCATTAAAGTTAATCACTGAGGCTTCAGAAAGCTCTCCAACCAAGGTTGCTAAGGATTATCCCGATGCTGTCCTTCGTG
ccttaac putative branch site (score: 3)
ttctttattattcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagaggctgatattaatggtcttatatgctgttgttttttcttaaaattttccttctttattattctttcccttaacatgagtttctgttgtattgacagGATAATAGACAATAAATCATTAAAGTTAATCACTGAGGCTTCAGAAAGCTCTCCAACCAAGGTTGCTAAGGATTATCCCGATGCTGTCCTTCGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - tatgctg
- - - - - - - - - - - - - - - - - - - - cttaaaa