1 5' 3' | 2 5' 3' | 3 5' 3' |
...gttctatgttctccattattagatctaccctaagaactactacagatgggttcctgttttacagggaggtgggtttaataattctcttcctctttctcagCTGATGTTGGAAATTACCTTGGTGACTTTCGTCCTGATTGGGGTTCAATGAGCTTCCTTATAGACTTCCTGCGACCAACTACTACTGACGGGTCATGGTA
species | Vitis vinifera |
transcript | Vv18s0072g00410.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCGGATCCAGCTGCTATTCGTCAAGTAATAGAACGTGATATAGCCTATG CTGATGTTGGAAATTACCTTGGTGACTTTCGTCCTGATTGGGGTTCAATGAEST: gi|32247973|gb|CD713792.1|CD713792
genomic: TTCGGATCCAGCTGCTATTCGTCAAGTAATAGAACGTGATATAGCCTATGgtatgtgttt ... tctttctcagCTGATGTTGGAAATTACCTTGGTGACTTTCGTCCTGATTGGGGTTCAATGA
EST: TTCGGATCCAGCTGCTATTCGTCAAGTAATAGAACGTGATATAGCCTATG CTGATGTTGGAAATTACCTTGGTGACTTTCGTCCTGATTGGGGTTCAATGAEST: gi|32249764|gb|CD715583.1|CD715583
genomic: TTCGGATCCAGCTGCTATTCGTCAAGTAATAGAACGTGATATAGCCTATGgtatgtgttt ... tctttctcagCTGATGTTGGAAATTACCTTGGTGACTTTCGTCCTGATTGGGGTTCAATGA
EST: TTCGGATCCAGCTGCTATTCGTCAAGTAATAGAACGTGATATAGCCTATG CTGATGTTGGAAATTACCTTGGTGACTTTCGTCCTGATTGGGGTTCAATGAEST: gi|110428995|gb|EC995481.1|EC995481
genomic: TTCGGATCCAGCTGCTATTCGTCAAGTAATAGAACGTGATATAGCCTATGgtatgtgttt ... tctttctcagCTGATGTTGGAAATTACCTTGGTGACTTTCGTCCTGATTGGGGTTCAATGA
EST: TTCGGATCCAGCTGCTATTCGTCAAGTAATAGAACGTGATATAGCCTATG CTGATGTTGGAAATTACCTTGGTGACTTTCGTCCTGATTGGGGTTCAATGAEST: gi|32268478|gb|CD717637.1|CD717637
genomic: TTCGGATCCAGCTGCTATTCGTCAAGTAATAGAACGTGATATAGCCTATGgtatgtgttt ... tctttctcagCTGATGTTGGAAATTACCTTGGTGACTTTCGTCCTGATTGGGGTTCAATGA
EST: TTCGGATCCAGCTGCTATTCGTCAAGTAATAGAACGTGATATAGCCTATG CTGATGTTGGAAATTACCTTGGTGACTTTCGTCCTGATTGGGGTTCAATGAEST: gi|110689139|gb|EE065104.1|EE065104
genomic: TTCGGATCCAGCTGCTATTCGTCAAGTAATAGAACGTGATATAGCCTATGgtatgtgttt ... tctttctcagCTGATGTTGGAAATTACCTTGGTGACTTTCGTCCTGATTGGGGTTCAATGA
EST: TTCGGATCCAGCTGCTATTCGTCAAGTAATAGAACGTGATATAGCCTATG CTGATGTTGGAAATTACCTTGGTGACTTTCGTCCTGATTGGGGTTCAEST: gi|110376951|gb|EC942020.1|EC942020
genomic: TTCGGATCCAGCTGCTATTCGTCAAGTAATAGAACGTGATATAGCCTATGgtatgtgttt ... tctttctcagCTGATGTTGGAAATTACCTTGGTGACTTTCGTCCTGATTGGGGTTCA
EST: TTCGGATCCAGCTGCTATTCGTCAAGTAATAGAACGTGATATAGCCTATG CTGATGTTGGAAATTACCTTGGTGACTTTCGTCCTGATTGGGGTTCAATGA
genomic: TTCGGATCCAGCTGCTATTCGTCAAGTAATAGAACGTGATATAGCCTATGgtatgtgttt ... tctttctcagCTGATGTTGGAAATTACCTTGGTGACTTTCGTCCTGATTGGGGTTCAATGA
atgggttcctgttttacagggaggtgggtttaataattctcttcctctttctcagCTGATGTTGGAAATTACCTTGGTGACTTTCGTCCTGATTGGGGTTCAATGAGCTTCCTTATAGACTTCCTGCGACCAACTACTACTGACGGGTCATGGTA
gtttaat putative branch site (score: 4)
taattctcttcctctt CT-rich tract
tttaataattctctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctatgttctccattattagatctaccctaagaactactacagatgggttcctgttttacagggaggtgggtttaataattctcttcctctttctcagCTGATGTTGGAAATTACCTTGGTGACTTTCGTCCTGATTGGGGTTCAATGAGCTTCCTTATAGACTTCCTGCGACCAACTACTACTGACGGGTCATGGTA
- - - - -tctccat
- - - - - - - - - - - - - accctaa
- - - - - - - - - - - - - - - - - - - - - cagatgg
- - - - - - - - - - - - - - - - - - - - - - - - - ttcctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgggt