Sequence
atgc intronic sequence ATGC exonic sequencegtaaagggtttctataatttcttggttgactctgtctcttttctattactctgtgttttttcatcccaaactccactctacttggtgatgattccactaatagcacacttaaaacatcagGTAGTCCCAGAGTTGAAGGGGATGAAGAGGAAGATGACATTGATGATTTGGAGAATGAGTTTGATTTCAGAAGCAATTACAGTAGGGATCCTCATCAGGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0072g00370.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA10G36790.1 (Glycine max), 3'ss of exon 2
gtaaagggtttctataatttcttggttgactctgtctcttttctattactctgtgttttttcatcccaaactccactctacttggtgatg-attccactaatagcacacttaa--aacatcagGTAGTCCCAGAGTTGAAGGGGATGAAGAGGAAGATGACATTGATGATTTGGAGAATGAGTTTGATTTCAGAAGCAATTACAGTAGGGATCCTCATCAGGT
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-------------------------gtgaggtt-tcaaccaacttttactttg-atctctttgttatatatattatatatcctggggacatatacttttagtaaca-atggaaccaacatcagGTAGTCCTAGAGTTGAGGGTGATGAGGAAGAAGAGGACATTGATGATTTGGAAAATGAGTTTGACATTGGAAGCAATATCAGGCATGACCCTCATCACGT
upper sequence: Vv18s0072g00370.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA02G08920.1 (Glycine max), 3'ss of exon 2
gtaaagggtttctataatttcttggttgactctgtctcttttctattactctgtgttttttcatcccaaactccactctacttggtgatgattccactaatagcacacttaaaacatcagGTAGTCCCAGAGTTGAAGGGGATGAAGAGGAAGATGACATTGATGATTTGGAGAATGAGTTTGATTTCAGAAGCAATTACAGTAGGGATCCTCATCAGGT
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--aaatagta-----gagagcgtattagagattgaattgttagcattcctct-tgttctattaacataatctg--------ttgata--gatttggctaacactgcaactga--tttcagGTAGTCCTAGAGTTGAGGGTGATGAAGAAGAGGATGATAGTGATGATTTGGAAAGTGAGTTTGATATTGGGAGCGTGTTCTCTGCTCGCCTTAACTATGG
upper sequence: Vv18s0072g00370.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G28080.1 (Glycine max), 3'ss of exon 1
gtaaagggtttctataatttcttggttgactctgtctcttttctattactctgtgttttttcatcccaaactccactctacttggtgatgattccactaatagcacacttaaaacatcagGTAGTCCCAGAGTTGAAGGGGATGAAGAGGAAGATGACATTGATGATTTGGAGAATGAGTTTGATTTCAGAAGCAATTACAGTAGGGATCCTCATCAGGT
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-----------------------------------------gttagcattcc-tgtttttctatt---aacataatct--cttgata--gatttggctaacactgcaactga--tttcagGTAGTCCTAGAGTTGAGGGTGATGAAGAAGAGGATGATACTGATGATTTAGAAAGTGAGTTTGATATTGGGAGTGTGTTCTCTGCTCGCCTTAACTATGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccaaactccactctacttggtgatgattccactaatagcacacttaaaacatcagGTAGTCCCAGAGTTGAAGGGGATGAAGAGGAAGATGACATTGATGATTTGGAGAATGAGTTTGATTTCAGAAGCAATTACAGTAGGGATCCTCATCAGGT
cactaat putative branch site (score: 2)
ttaaaacat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaagggtttctataatttcttggttgactctgtctcttttctattactctgtgttttttcatcccaaactccactctacttggtgatgattccactaatagcacacttaaaacatcagGTAGTCCCAGAGTTGAAGGGGATGAAGAGGAAGATGACATTGATGATTTGGAGAATGAGTTTGATTTCAGAAGCAATTACAGTAGGGATCCTCATCAGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA