Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgctaatgagattcttcagtgttgatatttaagtggacattaatacgatgaaattttacatctttttaacctaatccattgttatcttgaactcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCTTTTTGGGTTACAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAA

Basic information

species Vitis vinifera
transcript Vv18s0072g00340.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0072g00340.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA20G30810.1 (Glycine max), 3'ss of exon 2
tgctaatgagattcttcagtgttgatatttaagtggacattaatac----gatgaaattttacatctttt-taacctaatccattgttatcttga---actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCTTTTTGGGTTACAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAA
        |||   || |   ||| | ||| | || | | |  |       ||| | | |||  ||  || ||||  | |   ||  ||| ||     |||| |||||||||||| || || ||||||||||||  |||| |   || ||| ||||| || ||||||||||| ||||| ||||| |||||||| || ||||| || ||
--------agaactttaatatttgtttttttaatgaaaaatgtttttcttaatggactgttatgtcagttataactcagttactttgtattttctattactcgtgcagTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCATTCTTGGGTTACAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37184904|gb|CF604257.1|CF604257
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|37188563|gb|CF607912.1|CF607912
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|110689732|gb|EE066215.1|EE066215
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|71858057|gb|DT007112.1|DT007112
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|161711203|gb|FC061170.1|FC061170
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|349808701|gb|FQ406442.1|FQ406442
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|110724158|gb|EE099751.1|EE099751
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|161713530|gb|FC064065.1|FC064065
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|71866368|gb|DT015423.1|DT015423
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|349816394|gb|FQ403769.1|FQ403769
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|71861520|gb|DT010575.1|DT010575
EST:     ATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: ATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|161713678|gb|FC062818.1|FC062818
EST:     TTCTCTTGGATTTTTGCCAAGGAAGTGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|71859744|gb|DT008799.1|DT008799
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|37189205|gb|CF608554.1|CF608554
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|351019761|gb|FQ439578.1|FQ439578
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|161706995|gb|FC055103.1|FC055103
EST:     TTCTCTTGGATTTTTGCC-AGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|349816421|gb|FQ403796.1|FQ403796
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|71861114|gb|DT010169.1|DT010169
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|71869746|gb|DT018801.1|DT018801
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|161705752|gb|FC056219.1|FC056219
EST:     TTCTCTTGGATTTTTGCCGAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|351054391|gb|FQ450474.1|FQ450474
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|349820633|gb|FQ408462.1|FQ408462
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|33401635|gb|CF207262.1|CF207262
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|349815187|gb|FQ400342.1|FQ400342
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|161720179|gb|FC066762.1|FC066762
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|71857178|gb|DT006233.1|DT006233
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCCGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGTAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|110369430|gb|EC933590.1|EC933590
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|161711519|gb|FC059497.1|FC059497
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|110369977|gb|EC934151.1|EC934151
EST:     TTTGCC-AGGAAGCGGGCTGCTCGTCATATTGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCC
genomic: TTTGCCAAGGAAGCGGGCTGCTCGTCATA-GGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCC
EST: gi|71863182|gb|DT012237.1|DT012237
EST:     ATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: ATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|110703573|gb|EE080535.1|EE080535
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|349814772|gb|FQ409995.1|FQ409995
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|349810453|gb|FQ401899.1|FQ401899
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|110723960|gb|EE099371.1|EE099371
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|37183762|gb|CF603116.1|CF603116
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|349811661|gb|FQ409658.1|FQ409658
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|349825777|gb|FQ421876.1|FQ421876
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|349821126|gb|FQ408713.1|FQ408713
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|37189213|gb|CF608562.1|CF608562
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|27584369|gb|CB007064.1|CB007064
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|110689296|gb|EE065394.1|EE065394
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|71858386|gb|DT007441.1|DT007441
EST:     TTCTCCTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|110430432|gb|EC996991.1|EC996991
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|30251603|gb|CB969336.1|CB969336
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|30251566|gb|CB969299.1|CB969299
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|110689958|gb|EE066637.1|EE066637
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|71874098|gb|DT023153.1|DT023153
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|71857285|gb|DT006340.1|DT006340
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGGAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|349807527|gb|FQ401942.1|FQ401942
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|33401621|gb|CF207248.1|CF207248
EST:     GTCTCTAGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|110685399|gb|EE062095.1|EE062095
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|71860368|gb|DT009423.1|DT009423
EST:     TTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|351054990|gb|FQ440329.1|FQ440329
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|349823297|gb|FQ400276.1|FQ400276
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|349816778|gb|FQ399646.1|FQ399646
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|110703349|gb|EE080115.1|EE080115
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|161712586|gb|FC062188.1|FC062188
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|34549858|gb|CF518090.1|CF518090
EST:     TTCTCTTGGATTATTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|71865250|gb|DT014305.1|DT014305
EST:     TTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|161717004|gb|FC064668.1|FC064668
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|161708059|gb|FC056108.1|FC056108
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|161721156|gb|FC070392.1|FC070392
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|161705430|gb|FC057049.1|FC057049
EST:     TTCTCTTGGATTTTTGCC-AGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|30130215|gb|CB915554.1|CB915554
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|71863735|gb|DT012790.1|DT012790
EST:     ATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: ATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|71865086|gb|DT014141.1|DT014141
EST:     TTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|349811855|gb|FQ410652.1|FQ410652
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|349819812|gb|FQ404558.1|FQ404558
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|161712761|gb|FC061985.1|FC061985
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|161717780|gb|FC064729.1|FC064729
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
EST: gi|161715254|gb|FC064872.1|FC064872
EST:     TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG                         TGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT
genomic: TTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAGgtatacatgg ... actcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgatgaaattttacatctttttaacctaatccattgttatcttgaactcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCTTTTTGGGTTACAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAA
     aaattttacatctttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgctaatgagattcttcagtgttgatatttaagtggacattaatacgatgaaattttacatctttttaacctaatccattgttatcttgaactcatgcagTGAAGGCTTTTCCTAAGGATGACCCAAGCAAGCCTTGCAGGCTGACTGCCTTTTTGGGTTACAAAGCTGGGATGACCCACATTGTCAGGGAGGTTGAAAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
-gctaatg
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