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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttgtagaagaagtcattttctgaagttccattcattttctaaatgaatataaacaaaatgtgctcaagcacatactttctagtgttttgataccgatgttggccctttcaatttcgttattttgttttctttttttggaattttccatatttttagGTATCCACATACACCGGGCATATGGACAAAAGAACAAGTTGAAGCATGGAAACCTATTGTAGATGATGTACATGCTAAAGGCGGTATCTTTTTTTGTCAG

Basic information

species Vitis vinifera
transcript Vv18s0041g02270.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0041g02270.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA19G09320.1 (Glycine max), 3'ss of exon 2
gtacttgtagaagaagtcattttctgaagttccattcattttctaaatgaatataaacaaaatgtgctcaagcacatactttctagtgttttgataccgatgttggccct-ttcaatttcgttattttgttttctttttttggaattttccatatttttagGTATCCACATACACCGGGCATATGGACAAAAGAACAAGTTGAAGCATGGAAACCTATTGTAGATGATGTACATGCTAAAGGCGGTATCTTTTTTTGTCAG
                                                            ||| || | | | || ||| ||    || |   ||    | |  | | || || ||| |  || | ||  || ||||||     ||| || |||| |  ||||     || ||||| |||||||||| |||||| |||||||||||||||||||| |||||  |||  || ||||| ||||| ||| | || |||||||||
----------------------------------------------------------gtaatttgtttatg-acttacctttgcttgatg-aatgaaaaagaagacactgtttaatgtgattttgttaattacttttt-----attatctatatgtgcagGTTGGTGCACACACCCGGCATATGGAGAAAAGAGCAAGTTGAAGCATGGAAACCCATTGTGAATGCAGTTCATGCCAAAGGTGGTGTATTCTTTTGTCAG

upper sequence: Vv18s0041g02270.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G00980.1 (Glycine max), 3'ss of exon 2
gtacttgtagaagaagtcattttctgaagttccattcattttctaaatgaatataaacaaaatgtgctcaagcacatactttctagtgttttgataccgatg-ttggccctttcaatttcgttattttgttttctttttttggaattttc-catatttttagGTATCCACATACACCGGGCATATGGACAAAAGAACAAGTTGAAGCATGGAAACCTATTGTAGATGATGTACATGCTAAAGGCGGTATCTTTTTTTGTCAG
                                                               || |  |  ||| || |||| | | | |   | | | |  ||     || ||  |||  |    |  | ||  | |    |||  |   | || |  ||||||||||| ||||| ||||||||||||||| | |||||  |||| |||||||| ||||| ||||  || ||||| ||||| |||||||| |||||||||
---------------------------------------------------------------gtacctacacactta-tttcaattctctcatttctgctaattataatttgcaccttcactccagtactatcactatacataataataatacatgtcaagGTATCCACACACACCTGGCATATGGACAAAACAGCAAGTCCAAGCGTGGAAACCCATTGTGGATGCCGTTCATGCCAAAGGTGGTATCTTCTTTTGTCAG

upper sequence: Vv18s0041g02270.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA15G35410.1 (Glycine max), 3'ss of exon 2
gtacttgtagaagaagtcattttctgaagttccattcattttctaaatgaatataaacaaaatgtgctcaagcacatactttctagtgttttgataccg-atgttggccctttcaatttcgttattttgttttctttttttggaattttccatatttttagGTATCCACATACACCGGGCATATGGACAAAAGAACAAGTTGAAGCATGGAAACCTATTGTAGATGATGTACATGCTAAAGGCGGTATCTTTTTTTGTCAG
                                                        | || || |  ||    | |||  || || | | ||  |  || ||| |     |    || || ||   | ||  ||    ||| |    |    | |||  ||  ||||| |  ||   || |||||| ||||||| ||| |||||||||||||||| ||||| |||| ||| ||||| ||||| ||||| || || ||||||
------------------------------------------------------tgataagatttaatcttctatatatatt-tattctcttcctctcgcatgataaaattc---atctcatttgatggtactcccccttttgg---tgatgtgtttaaagCCATCCAAACGCAGTTGGTATATGGTCAAAAGAGCAAATTGAAGCATGGAAACCCATTGTGGATGCTGTTCATGCCAAAGGTGGTATATTCTTCTGTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccctttcaatttcgttattttgttttctttttttggaattttccatatttttagGTATCCACATACACCGGGCATATGGACAAAAGAACAAGTTGAAGCATGGAAACCTATTGTAGATGATGTACATGCTAAAGGCGGTATCTTTTTTTGTCAG
                                       ttttccatattttt  CT-rich tract
               ttattttgttttcttt  TA-rich tract