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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttaatgttgttgcttatatttatttttcttttatccttttcatatgaaaattataatgcacaaaaaaataataacacagatataacaatatatcagtgaaataagcatgcctgttatagcattcagattttctttctctgaaatgttgggcttatataatgtatcaattaaatatttaaagcttctattttgtagGTGGATGATTCTTCCTTTGAAGATGTGCCTGATGTTATTGCTGACTATGATATGTGTATAGTAAAAAGCATGCGGCTAGATTCAAATATTATTTCTCGTG

Basic information

species Vitis vinifera
transcript Vv18s0041g01830.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|46917578|gb|CN546907.1|CN546907
EST:     CTTCAAATAAATACACTAGAGAATATTTACAAAACTACCCATTTATCCAG                         GTGGATGATTCTTCCATTGAAGATGTGCCTGATGTTATTGCTGACTATGAT
genomic: CTTCAAATAAATACACTAGAGAATATTTACAAAACTACCCATTTATCCAGgtttaatgtt ... tattttgtagGTGGATGATTCTTCCTTTGAAGATGTGCCTGATGTTATTGCTGACTATGAT
EST: gi|71863583|gb|DT012638.1|DT012638
EST:     CTTCAAATAAATACACTAGAGAATATTTACAAAACTACCCATTTATCCAG                         GTGGATGATTCTTCCTTTGAAGATGTGCCTTATGTTATTGCTGACTATGAT
genomic: CTTCAAATAAATACACTAGAGAATATTTACAAAACTACCCATTTATCCAGgtttaatgtt ... tattttgtagGTGGATGATTCTTCCTTTGAAGATGTGCCTGATGTTATTGCTGACTATGAT
EST: gi|46917579|gb|CN546908.1|CN546908
EST:     CTTCAAATAAATACACTAGAGAATATTTACAAAACTACCCATTTATCCAG                         GTGGATGATTCTTCCATTGAAGATGTGCCTGATGTTATTGCTGACTATGAT
genomic: CTTCAAATAAATACACTAGAGAATATTTACAAAACTACCCATTTATCCAGgtttaatgtt ... tattttgtagGTGGATGATTCTTCCTTTGAAGATGTGCCTGATGTTATTGCTGACTATGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatgttgggcttatataatgtatcaattaaatatttaaagcttctattttgtagGTGGATGATTCTTCCTTTGAAGATGTGCCTGATGTTATTGCTGACTATGATATGTGTATAGTAAAAAGCATGCGGCTAGATTCAAATATTATTTCTCGTG
                                         cttctatttt  CT-rich tract
           ttatataatgtatcaa  TA-rich tract