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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtcatggcgaacaattttagatatcatatctattttgatataccagtagaaagaaaaatttacagtggtttgacataatttgtgtgtatttgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACTGTGGCTGACATGATAAAGGGCAAGACTCCAGAGGAGATTCGCAAAACTT

Basic information

species Vitis vinifera
transcript Vv18s0001g14860.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g14860.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os09g36830.1 (Oryza sativa), 3'ss of exon 1
gtcatggcgaacaattttagatatcatatctattttgatataccagtaga-aagaaaaatttacagtggtttgacataatttgtgtgtat--ttgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACTGTGGCTGACATGATAAAGGGCAAGACTCCAGAGGAGATTCGCAAAACTT
 |  |||   |   | | |    ||   | |||     ||||    |    |  |   || ||||  |  | ||    |||  |||| ||  |||  |||||||| |||||||| || ||||||||| | || |||||||| || || ||||| |||||||||||||| ||||| ||||| ||||||||||| ||||| || |
-tgctggatgattgtctcatgcttctgttgtatccatgtatattgttttttatcattcatgtacaaag--tcgattagattcatgtgcatgtttgtgtttcagGCTGCAAACTACCTCAACATCAAGGGACTGCTGGATCTGACCTGCCAGACCGTGGCTGACATGATCAAGGGGAAGACACCAGAGGAGATCCGCAAGACCT

upper sequence: Vv18s0001g14860.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os11g26910.1 (Oryza sativa), 3'ss of exon 1
gtcatggcgaacaat-tttagatatcatatct--attttgatatac-cagtagaaagaaaaatttacagtggtttgacataatttgtgtgtatttga---ttttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACTGTGGCTGACATGATAAAGGGCAAGACTCCAGAGGAGATTCGCAAAACTT
        |||| || | |   | |  |  ||  || ||||| |   |  |||  | |   |||     |  ||  ||    ||| | ||  | | |       ||||| || ||||| || ||||||||| |  | ||||| |||||||| |||||||| ||||||||||| ||||| |||||||| |||||||| ||||| || |
-------tgaactatgtattccttttgtggctgaatgttgatctgtgctttagccatagtgattactgcttcttataccatgtttatttgattctcaaatcccacagGCCGCGAACTACCTCAACATCAAGGGGTTGCTGGACCTTACTTGCCAGACTGTTGCTGACATGATCAAGGGGAAGACTCCTGAGGAGATCCGCAAGACCT

upper sequence: Vv18s0001g14860.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G101446_T01 (Zea mays), 3'ss of exon 1
gtcatggcgaacaattttagatatcatatctattttgatataccagtagaaagaaaaatttacagtggtttgaca-taatttgtgtgtatt-tgatttt-cagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACTGTGGCTGACATGATAAAGGGCAAGACTCCAGAGGAGATTCGCAAAACTT
  ||    |      |||   | |  ||||  |  | ||||||    |     ||  |||    | |   ||    | ||| || | |    | |||||  |||| ||||||||||||||||||||| |||| || || || || ||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||| || |
--cacactgtttttgtttgatttttgtatc-gtaattatatactgtaaattgtaattattgtttgagcactgcttctgattcgtttctcccctaattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACTGTTGCTGACATGATCAAGGGCAAGACACCAGAAGAGATTCGCAAGACCT

upper sequence: Vv18s0001g14860.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EDP05410 (Chlamydomonas reinhardtii), 3'ss of exon 1
--------------gtcatggcgaacaattttagatatcatatctatt----ttgatataccagtagaaagaaaaatttacagtg-gtttgacat--aatttgtgtgtatttgattttcagGCAGCA---------AACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACTGTGGCTGACATGATAAAGGGCAAGACTCCAGAGGAGATTCGCAAAACTT
                  ||| | ||    || | |  |||  |  ||      |     |||   |  |     ||  |  | | |   ||| |  ||   |  || ||  |  | ||| ||| ||         ||||| |||||||||||| |||| ||||| || || || |||||||||||| | ||||| ||||| || || ||||||||||| ||||| || |
gtaagcgcgcgagaaatttggagcacctcgttcgctcgcatggcccttagagccgcgcccccatcggccatggctatgcattgcgagcgagacgtctaacgcgcatgcatgcggctctcacgcaacacagGCTGCGAACTACCTGAACATCAAGGGTCTGCTGGACCTGACCTGCCAGACTGTGGCTCAGATGATTAAGGGGAAAACGCCAGAGGAGATCCGCAAGACGT

upper sequence: Vv18s0001g14860.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S9_292V6.1 (Physcomitrella patens), 3'ss of exon 2
-------------------------------------------------------------gtcatggcgaacaattttagatatcatatcta----ttttgatataccagtagaaagaaaaatttacagtggt---ttgacataatttgtgtgtatttgatttt-----cagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACTGTGGCTGACATGATAAAGGGCAAGACTCCAGAGGAGATTCGCAAAACTT
                                                             |    |||| |        |||  |   |  |    || ||       ||  ||  |    | ||   |||     |||   | |  |  | ||  |  ||  |     |||||||| |||||  ||||||||||||  || |||||  | || || ||||| ||||| |||||||||||||| ||||| || ||||||||  | ||||| |
gtaagtgatgtgcatgcgaccctgtttgttgcgtgcagggcgggggatggggtgcatcccagcgggggcggaagcgcgatgatggcgcgtgcaacgtttgtggggcgagagaggagggggtgacttggggtgaggagttgtgctgacgtcggggtggtgaatgatgggaacagGCAGCGAACTACTTGAACATCAAGAACCTGCTGGACTTGACGTGCCAGACGGTGGCGGACATGATAAAGGGGAAGACGCCGGAGGAGATCAGGAAAACGT

upper sequence: Vv18s0001g14860.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EFJ22022 (Selaginella moellendorffii), 3'ss of exon 1
-----gtcatggcgaacaattttagatatcatatctattttgatataccagtagaaaga---aaaatttacagtggt--ttgacataatttgtgtgtatttgattt---tcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACTGTGGCTGACATGATAAAGGGCAAGACTCCAGAGGAGATTCGCAAAACTT
      |     ||  | ||||       | | | | | | | | | |  ||     |     |  |||  | ||    | ||  |   |  | ||  ||||  ||    ||||| || |||||||| ||||||  ||   | |||||||| || || || || ||||| |||||||| ||||||||||| || |||||||| ||||| ||||
gtaggatttcttcgttcgatttcttcccccctttttctctcgcttttctcgttttgggtcttgagctttcgactgacaatcgatttgggtgatctggttttgcgttgttccagGCCGCGAACTATCTCAACATCCGGAACTTGCTGGATCTGACGTGCCAAACCGTGGCGGACATGATCAAGGGCAAGACCCCGGAGGAGATCCGCAAGACTT

upper sequence: Vv18s0001g14860.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EFJ18284 (Selaginella moellendorffii), 3'ss of exon 1
-----gtcatggcgaacaattttagatatcatatctattttgatataccagtagaaagaaaaatttacagtggtttgaca--taatttgtgtgtatttgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACTGTGGCTGACATGATAAAGGGCAAGACTCCAGAGGAGATTCGCAAAACTT
      |     ||  | ||||       | | | | | | | | | |  ||     |     |   |  | |  |||||    ||||| ||| |||||  || ||||| || |||||||| ||||||  ||   | |||||||| || || || || ||||| |||||||| ||||||||||| || |||||||| ||||| ||||
gtaggatttcttcgttcgatttcttcccccctttttctctcgcttttctcgttttgggtct--tgagctttcgactgacaatcgatttgggtg-atttg--ttccagGCCGCGAACTATCTCAACATCCGGAACTTGCTGGATCTGACGTGCCAAACCGTGGCGGACATGATCAAGGGCAAGACCCCGGAGGAGATCCGCAAGACTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110402562|gb|EC960444.1|EC960444
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|110390085|gb|EC954972.1|EC954972
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|30131560|gb|CB916899.1|CB916899
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|33407560|gb|CF213187.1|CF213187
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|110421219|gb|EC987510.1|EC987510
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|110400923|gb|EC967510.1|EC967510
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|110399173|gb|EC965666.1|EC965666
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|110710481|gb|EE086852.1|EE086852
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|110692056|gb|EE070862.1|EE070862
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|110686819|gb|EE064891.1|EE064891
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|37183693|gb|CF603047.1|CF603047
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|110423378|gb|EC989723.1|EC989723
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|26262593|gb|CA813656.1|CA813656
EST:     ATCCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|34362211|gb|CF403796.1|CF403796
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|30127543|gb|CB912882.1|CB912882
EST:     GATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: GATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|27580373|gb|CB003068.1|CB003068
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|110401935|gb|EC968561.1|EC968561
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|161714783|gb|FC063931.1|FC063931
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|110408902|gb|EC974550.1|EC974550
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|110404544|gb|EC969770.1|EC969770
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|110686912|gb|EE063862.1|EE063862
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|77582212|gb|DV220067.1|DV220067
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|110378255|gb|EC943377.1|EC943377
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|110692653|gb|EE072147.1|EE072147
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|110402271|gb|EC959725.1|EC959725
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|110365325|gb|EC928139.1|EC928139
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|33407487|gb|CF213114.1|CF213114
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|110409915|gb|EC975589.1|EC975589
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|110364637|gb|EC928036.1|EC928036
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|110702635|gb|EE078778.1|EE078778
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|110361623|gb|EC925109.1|EC925109
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|110404798|gb|EC970320.1|EC970320
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|110392347|gb|EC957703.1|EC957703
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|110372250|gb|EC936403.1|EC936403
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|37183902|gb|CF603256.1|CF603256
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|110390749|gb|EC955675.1|EC955675
EST:     TTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: TTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|110400973|gb|EC967563.1|EC967563
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|71877045|gb|DT026100.1|DT026100
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|110715305|gb|EE093202.1|EE093202
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|110402258|gb|EC959686.1|EC959686
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|30135640|gb|CB920978.1|CB920978
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|110700142|gb|EE077842.1|EE077842
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|110692732|gb|EE068346.1|EE068346
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|110405336|gb|EC970877.1|EC970877
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|26261450|gb|CA812513.1|CA812513
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|110365620|gb|EC928920.1|EC928920
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|110377210|gb|EC942269.1|EC942269
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|110401080|gb|EC967674.1|EC967674
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|110403146|gb|EC964376.1|EC964376
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|30321375|gb|CD004637.1|CD004637
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|161712092|gb|FC061464.1|FC061464
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|110411456|gb|EC977170.1|EC977170
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|110689351|gb|EE065498.1|EE065498
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
EST: gi|27582009|gb|CB004704.1|CB004704
EST:     ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTG                         GCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT
genomic: ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGgttagttttc ... tgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtagaaagaaaaatttacagtggtttgacataatttgtgtgtatttgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACTGTGGCTGACATGATAAAGGGCAAGACTCCAGAGGAGATTCGCAAAACTT
                                                ttttc  CT-rich tract
     aagaaaaatttaca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcatggcgaacaattttagatatcatatctattttgatataccagtagaaagaaaaatttacagtggtttgacataatttgtgtgtatttgattttcagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACTGTGGCTGACATGATAAAGGGCAAGACTCCAGAGGAGATTCGCAAAACTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
-tcatggc
- - - - -aacaatt
- - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtgt