Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtagtgattctctgcttattcctcttttggattccccatcgaaggggcagaataatataattaattaactctgcattcgattgacgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAACTCCGACTGCAGTCGGTTGTCGATTGCCACGTTCCAGAACCCAGCCCCAG

Basic information

species Vitis vinifera
transcript Vv18s0001g14310.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g14310.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os04g56700.1 (Oryza sativa), 3'ss of exon 2
gtgagtagtgattctctgcttattcctcttttggattccccatcgaaggggcagaataatataattaattaactctgcattcgattgacgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAACTCCGACTGCAGTCGGTTGTCGATTGCCACGTTCCAGAACCCAGCCCCAG
                ||  || | |        |  |   |||   || | |   |  | ||  | ||  |      |  | ||        ||||||||||||||||||||||||||| || ||||| ||||| || |||||||||||||||||| | ||| ||||||| || |||||||||||||| || || |
---------------gtgagtactacggcc----acactgtatccttggtg-attttgttttagatcatgcatctcttaggcaatgtgaacttgcagTATCTGAGCAATGGGAGGTTCAAGAACGCGGATCACCAGGCGGTGGTGAACTCCGACTGCTGCCGGCTGTCGATCGCGACGTTCCAGAACCCGGCGCCGG

upper sequence: Vv18s0001g14310.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G062396_T01 (Zea mays), 3'ss of exon 2
gtgagtagtgattctctgcttattcctcttttggattccccatcgaaggggcagaataatataattaattaactctgcattcgattgacgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAACTCCGACTGCAGTCGGTTGTCGATTGCCACGTTCCAGAACCCAGCCCCAG
||||||     |||  | | | ||| | | || | |    |||  || |       | | |   |   | |  ||      ||   |    | ||||   |||||||| || |||||||| || ||||||||||| || ||||||||||| || ||||| ||  |||| || ||||||||||||||||| || || |
gtgagtctccgttcctt-cgtcttcgtttgttcgttcgttcatgcaatgcatgcggtgaaaatgtgtgtgatatccatgaacgtacg-tacgtgcagCTCCTGAGCAACGGCAGGTTCAAGAACGCGGACCACCAGGCGGTGGTGAACTCGGAGTGCAGCCGCCTGTCCATCGCCACGTTCCAGAACCCGGCGCCCG

upper sequence: Vv18s0001g14310.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA02G05450.2 (Glycine max), 3'ss of exon 2
gtgagtagtgattctctgcttattcctcttttggattccccatcgaaggggcaga--ataatataa-ttaattaact---ctgcattcgattgacgtgg--gcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAACTCCGACTGCAGTCGGTTGTCGATTGCCACGTTCCAGAACCCAGCCCCAG
     |  |  || |           ||| |||| ||  || |  |    |      ||||| ||| ||  || | |    ||   | | |  || ||   |||||||||||||||||| |||||||| ||||| || |||||||| |||||||||||  ||   || || ||||| || ||||| || || |||||||| ||| 
-----ttatttttatgaagcagcaagtctattggtttgaccgtgtactttgtttttcataatttaaatttgttcatttttttgtggtgggtgcacatgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAACTCAAACCATAGCCGTTTGTCCATAGCCACTTTTCAAAACCCAGCACCAA

upper sequence: Vv18s0001g14310.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA02G05470.1 (Glycine max), 3'ss of exon 2
---------gtga-gtagtgattctctgcttattcctcttttggattccccatcgaaggggcagaataatataattaattaactctgcattcgattgacgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAACTCCGACTGCAGTCGGTTGTCGATTGCCACGTTCCAGAACCCAGCCCCAG
          ||| | ||  | ||| |     ||   | | |   ||     ||        |   |||  |  || |||   | ||   | | |  | |   ||||||||||| |||||| |||||||| ||||| || |||||||| |||||||||||  |    || || ||||| || |||||||| || |||||||| ||| 
tttatttttatgaagcagcaagtctatttggtttgaccgtgtactttgtttttca------taatttaaatttgttcattt-ttttgtggtgggtgcatgaatgcagTATCTGACCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAACTCAAATCATAGCCGTTTGTCCATAGCCACGTTTCAAAACCCAGCACCAA

upper sequence: Vv18s0001g14310.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA01G37120.1 (Glycine max), 3'ss of exon 2
---------gtgagtagtgattctctgcttattcctcttttggattccccatcgaaggggcagaataatataattaattaactctg-cattcgattgacgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAACTCCGACTGCAGTCGGTTGTCGATTGCCACGTTCCAGAACCCAGCCCCAG
            | |  ||||  |   ||| ||  |||||     |  | ||    | |     | |||  |||||||| |  | |  |    |||   |   |||||||||||| ||||| |||||||| ||||| || |||||||| |||||||||||   |||||| ||  | || || ||||| ||||| |||||||| | ||
aatatttcttccatttatgatatttaactt-tttttctttctacctatctattactgag-----agaattcaattaatttatgcgggtaacatatttgtg-atgcagTATCTGAGTAATGGAAGGTTCAAGAATGCTGATCACCAAGCAGTGGTGAACTCAAGCTGCAGCCGTGTATCCATAGCCACATTCCAAAACCCAGCACAAG

upper sequence: Vv18s0001g14310.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G23880.1 (Glycine max), 3'ss of exon 2
gtgagtagtgattctctgcttattcctcttttggattccccatcgaaggggcagaataatataattaatta-----actctgcattcgattg-acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAACTCCGACTGCAGTCGGTTGTCGATTGCCACGTTCCAGAACCCAGCCCCAG
   | || |  |  | |  || |  |      ||  |    | ||        |  |   ||||| | |||     | | ||  |  |  || |     |||||||||||||||||| |||||||| | ||| || || ||||| |||||||||||  ||   || || ||||| || |||||||| || ||||| |  ||| 
---attaattttattttatttttatcaagcaagggcttttgaccgtgtactttgttttccataataatttattcaaattttgggtgtgggtgcatccatgcagTATCTGAGCAATGGAAGGTTCAAGAGTGCTGATCATCAAGCGGTGGTGAACTCAAACCATAGCCGTTTGTCCATAGCCACGTTTCAAAACCCTGTACCAA

upper sequence: Vv18s0001g14310.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G51240.1 (Arabidopsis thaliana), 3'ss of exon 2
gtgagtagtgattctctgcttattcctcttttggattccccatcgaaggggcagaataatataattaattaactctgcattcgattgacgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAACTCCGACTGCAGTCGGTTGTCGATTGCCACGTTCCAGAACCCAGCCCCAG
|| |||| |   | ||   |||||    |||| | ||| |  |    ||    || |        |  | ||   ||  ||   |||| |     ||| | ||||||||||||||||||| ||||| || || || || |||||||||||  |||  ||  | || || || ||||||||||||||||| || || |
gttagtact--ctatccatttattggcttttttgtttctctgtttttggttttgact--------tggtcaatcttgatttgtcttgatga----agTTTTTGAGCAATGGGAGGTTCAAGAATGCTGATCATCAGGCCGTGGTGAACTCTAACTCGAGCAGATTATCCATAGCCACGTTCCAGAACCCCGCGCCGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352772649|gb|FQ472124.1|FQ472124
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
EST: gi|30297957|gb|CB974751.1|CB974751
EST:     CCAGCCCGTGGAAGG-GANATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACC
genomic: CCAGCCCGTGGAAGGAGC-ATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACC
EST: gi|26258505|gb|CA809568.1|CA809568
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
EST: gi|352791198|gb|FQ480070.1|FQ480070
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCCAAAATGCGGACCACCAAGCTGTGG
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGG
EST: gi|30298020|gb|CB974814.1|CB974814
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAATGCGGACCCCCAAGCTGTGGTGAAC
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
EST: gi|352765189|gb|FQ465886.1|FQ465886
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
EST: gi|110430036|gb|EC996559.1|EC996559
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAACTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
EST: gi|352791238|gb|FQ477523.1|FQ477523
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
EST: gi|352773530|gb|FQ472312.1|FQ472312
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
EST: gi|33408316|gb|CF213943.1|CF213943
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
EST: gi|34320725|gb|CF373479.1|CF373479
EST:     GGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAATGCGGCCCCCCAAGCTGTGGTGAGC
genomic: GGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
EST: gi|351029953|gb|FQ430695.1|FQ430695
EST:     TCCAGCCCGTGGAAAGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAATGCGGACCCCCAAGCTGTGGT
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGT
EST: gi|110685387|gb|EE062062.1|EE062062
EST:     TCCAGCCCGTGGAAGGAGCATTTGNTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCCATGGGGAGGTTCAAAA-TGCGGACCACCCAGCTGTGGTGAA
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGG-AGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAA
EST: gi|352763416|gb|FQ471728.1|FQ471728
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATTTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
EST: gi|30251180|gb|CB968913.1|CB968913
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
EST: gi|349824648|gb|FQ413315.1|FQ413315
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAAT
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAAT
EST: gi|110361873|gb|EC925376.1|EC925376
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
EST: gi|110397889|gb|EC963858.1|EC963858
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
EST: gi|33405468|gb|CF211095.1|CF211095
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAACGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
EST: gi|33408229|gb|CF213856.1|CF213856
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
EST: gi|351053300|gb|FQ459168.1|FQ459168
EST:     TCCAGCCCGTGGAAGGAACATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTTCAAAA-TGCGGACCACCAAGCTGTGGTGAA
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTT-CAAAAATGCGGACCACCAAGCTGTGGTGAA
EST: gi|33408997|gb|CF214624.1|CF214624
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
EST: gi|351053122|gb|FQ455579.1|FQ455579
EST:     TCCAGCCCGTGGAAAGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTTGAA
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGT-GAA
EST: gi|33409742|gb|CF215369.1|CF215369
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAATGCGGACCAG-ATAGCTGTGGTGAA
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCA-AGCTGTGGTGAA
EST: gi|352782372|gb|FQ470275.1|FQ470275
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATTTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
EST: gi|22012408|gb|BQ797442.1|BQ797442
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
EST: gi|110361268|gb|EC924731.1|EC924731
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
EST: gi|30251588|gb|CB969321.1|CB969321
EST:     TCCGGCCCGTGGAAAGAGCATTTGTTGTGANTTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGG
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGG
EST: gi|110417693|gb|EC983768.1|EC983768
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
EST: gi|33403513|gb|CF209140.1|CF209140
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
EST: gi|352795507|gb|FQ480095.1|FQ480095
EST:     TCCAGCCCGTGGAAAGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAAGTTCAAAAATGCGGACCACCAAGCTGTG
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTG
EST: gi|30251669|gb|CB969402.1|CB969402
EST:     TCCGGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATTTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
EST: gi|110702718|gb|EE078932.1|EE078932
EST:     TCCAGCCCGTGGAAAGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGGAG-TTCAAAAATGCGGGAC-ACCAAGCTGTGGTGG
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGG-AGGTTCAAAAATGCGG-ACCACCAAGCTGTGGTGA
EST: gi|110361701|gb|EC925194.1|EC925194
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
EST: gi|110379799|gb|EC945019.1|EC945019
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
EST: gi|110685441|gb|EE062165.1|EE062165
EST:     CCAGACCGGGGAAGGAGCATTTGTTGTCAATTTTGGGCGACCATGGTCAT                         TATCTGAGCAATGG
genomic: CCAGCCCGTGGAAGGAGCATTTGTTGTCAATTT-GGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGG
EST: gi|22011692|gb|BQ796726.1|BQ796726
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
EST: gi|110429924|gb|EC996438.1|EC996438
EST:     GTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
genomic: GTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
EST: gi|351044693|gb|FQ443224.1|FQ443224
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAAGTTCAAAAATGCGAACCACCAAGC
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGC
EST: gi|33408910|gb|CF214537.1|CF214537
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGA
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGA
EST: gi|26258087|gb|CA809150.1|CA809150
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
EST: gi|110733199|gb|EE109182.1|EE109182
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
EST: gi|110700708|gb|EE077597.1|EE077597
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
EST: gi|26258565|gb|CA809628.1|CA809628
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGGGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
EST: gi|34319506|gb|CF372260.1|CF372260
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
EST: gi|110428138|gb|EC994600.1|EC994600
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAACTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
EST: gi|352763830|gb|FQ473533.1|FQ473533
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
EST: gi|26263831|gb|CA814894.1|CA814894
EST:     CCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAAATGCGGACCACCCAAGCTGTGGTGG
genomic: C-AGCCCGTGGAAGGAGCATTTGTTGTCAATTT-GGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAA-TGCGGACCACC-AAGCTGTGGTG-
EST: gi|110418697|gb|EC984861.1|EC984861
EST:     GTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
genomic: GTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
EST: gi|30136307|gb|CB921645.1|CB921645
EST:     GGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
genomic: GGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
EST: gi|33403705|gb|CF209332.1|CF209332
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
EST: gi|351013367|gb|FQ425072.1|FQ425072
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCCTGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGA
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGA
EST: gi|26265743|gb|CA816806.1|CA816806
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
EST: gi|110430260|gb|EC996802.1|EC996802
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAACTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
EST: gi|352773295|gb|FQ470882.1|FQ470882
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
EST: gi|110387961|gb|EC952670.1|EC952670
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
EST: gi|351042243|gb|FQ442710.1|FQ442710
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATCTGAGCAATGGGAGGTTCAAAA-TGCGGACCACCAAGCTGTGGTGAAC
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC
EST: gi|352769016|gb|FQ470964.1|FQ470964
EST:     TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCAT                         TATGTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAT
genomic: TCCAGCCCGTGGAAGGAGCATTTGTTGTCAATTTGGGCGACCATGGTCATgtgagtagtg ... acgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgaaggggcagaataatataattaattaactctgcattcgattgacgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAACTCCGACTGCAGTCGGTTGTCGATTGCCACGTTCCAGAACCCAGCCCCAG
            aataatataattaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtagtgattctctgcttattcctcttttggattccccatcgaaggggcagaataatataattaattaactctgcattcgattgacgtgggcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAACTCCGACTGCAGTCGGTTGTCGATTGCCACGTTCCAGAACCCAGCCCCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG