Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

atttgaatcttatatatgatacATTTGAATCAGGTATTTATGTCGTAGAATATTTTCTTGCATCCAAAATCCCTGGCAAGGAAAAAATATAGCATTTTCTTATCACATATGGACATGACAGC

Basic information

species Vitis vinifera
transcript Vv18s0001g09650.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26257821|gb|CA808884.1|CA808884
EST:     CTTCTAATAGGATAAGATGTTGCTATTGCATCATGGCTATCCCCACAGAC                         ATTTGAATCAGGTATTTATGTCGTAGAATATTTTCTTGCATCCAAAATCCC
genomic: CTTCTAATAGGATAAGATGTTGCTATTGCATCATGGCTATCCCCACAGACatttgaatct ... tatatgatacATTTGAATCAGGTATTTATGTCGTAGAATATTTTCTTGCATCCAAAATCCC
EST: gi|26258581|gb|CA809644.1|CA809644
EST:     CTTCTAATAGGATAAGATGTTGCTATTGCATCATGGCTATCCCCACAGAC                         ATTTGAATCAGGTATTTATGTCGTAGAATATTTTCTTGCATCCAAAATCCC
genomic: CTTCTAATAGGATAAGATGTTGCTATTGCATCATGGCTATCCCCACAGACatttgaatct ... tatatgatacATTTGAATCAGGTATTTATGTCGTAGAATATTTTCTTGCATCCAAAATCCC
EST: gi|34362889|gb|CF404474.1|CF404474
EST:     CTTCTAATAGGATAAGATGTTGCTATTGCATCATGGCTATCCCCACAGAC                         ATTTGAATCAGGTATTTATGTCGTAGAATATTTTCTTGCATCCAAAATCCC
genomic: CTTCTAATAGGATAAGATGTTGCTATTGCATCATGGCTATCCCCACAGACatttgaatct ... tatatgatacATTTGAATCAGGTATTTATGTCGTAGAATATTTTCTTGCATCCAAAATCCC
EST: gi|34546428|gb|CF514660.1|CF514660
EST:     CTTTTAATAGGATAAGATGTTGCTATTGCATCATGGCTATCCCCACAGAC                         ATTTGAATCAGGTATTTATGTCGTAGAATATTTTCTTGCATCCAAAATCCC
genomic: CTTCTAATAGGATAAGATGTTGCTATTGCATCATGGCTATCCCCACAGACatttgaatct ... tatatgatacATTTGAATCAGGTATTTATGTCGTAGAATATTTTCTTGCATCCAAAATCCC
EST: gi|30329680|gb|CD012942.1|CD012942
EST:     CTTCTAATAGGATAAGATGTTGCTATTGCATCATGGCTATCCCCACAGAC                         ATT-GAATCAGGT
genomic: CTTCTAATAGGATAAGATGTTGCTATTGCATCATGGCTATCCCCACAGACatttgaatct ... tatatgatacATTTGAATCAGGT
EST: gi|45771619|gb|CN007471.1|CN007471
EST:     CTTCTAATAGGATAAGATGTTGCTATTGCATCATGGCTATCCCCACAGAC                         ATTTGAATCAGGTATTTATGTCGTAGAATATTTTCTTGCATCCAAAATCCC
genomic: CTTCTAATAGGATAAGATGTTGCTATTGCATCATGGCTATCCCCACAGACatttgaatct ... tatatgatacATTTGAATCAGGTATTTATGTCGTAGAATATTTTCTTGCATCCAAAATCCC
EST: gi|34546344|gb|CF514576.1|CF514576
EST:     CTTCTAATAGGATAAGATGTTGCTATTGCATCATGGCTATCCCCACAGAC                         ATTTGAATCAGGTATTTATGTCGTAGAATATTTTCTTGCATCCAAAATCCC
genomic: CTTCTAATAGGATAAGATGTTGCTATTGCATCATGGCTATCCCCACAGACatttgaatct ... tatatgatacATTTGAATCAGGTATTTATGTCGTAGAATATTTTCTTGCATCCAAAATCCC
EST: gi|46909958|gb|CN545333.1|CN545333
EST:     CTTCTAATAGGATAAGATGTTGCTATTGCATCATGGCTATCCCCACAGAC                         ATTTGAATCAGGTATTTATGTCGTAGAATATTTTCTTGCATCCAAAATCCC
genomic: CTTCTAATAGGATAAGATGTTGCTATTGCATCATGGCTATCCCCACAGACatttgaatct ... tatatgatacATTTGAATCAGGTATTTATGTCGTAGAATATTTTCTTGCATCCAAAATCCC
EST: gi|110366759|gb|EC930677.1|EC930677
EST:     CTTCTAATAGGATAAGATGTTGCTATTGCATCATGGCTATCCCCACAGAC                         ATTTGAATCAGGTATTTATGTCGTAGAATATTTTCTTGCATCCAAAATCCC
genomic: CTTCTAATAGGATAAGATGTTGCTATTGCATCATGGCTATCCCCACAGACatttgaatct ... tatatgatacATTTGAATCAGGTATTTATGTCGTAGAATATTTTCTTGCATCCAAAATCCC
EST: gi|30134252|gb|CB919590.1|CB919590
EST:     CTTCTAATAGGATAAGATGTTGCTATTGCATCATGGCTATCCCCACAGAC                         ATTTGAATCAGGTATTTATGTCGTAGAATATTTTCTTGCATCCAAAATCCC
genomic: CTTCTAATAGGATAAGATGTTGCTATTGCATCATGGCTATCCCCACAGACatttgaatct ... tatatgatacATTTGAATCAGGTATTTATGTCGTAGAATATTTTCTTGCATCCAAAATCCC
EST: gi|30330291|gb|CD013553.1|CD013553
EST:     CTTCTAATAGGATAAGATGTTGCTATTGCATCATGGCTATCCCCACAGAC                         ATTTGAATCAGGTATTTATGTCGTAGAATATTTTCTTGCATCCAAAATCCC
genomic: CTTCTAATAGGATAAGATGTTGCTATTGCATCATGGCTATCCCCACAGACatttgaatct ... tatatgatacATTTGAATCAGGTATTTATGTCGTAGAATATTTTCTTGCATCCAAAATCCC
EST: gi|27584895|gb|CB007590.1|CB007590
EST:     CTTCTAATAGGATAAGATGTTGCTATTGCATCATGGCTATCCCCACAGAC                         ATTTGAATCAGGTATTTATGTCGTAGAATATTTTCTTGCATCCAAAATCCC
genomic: CTTCTAATAGGATAAGATGTTGCTATTGCATCATGGCTATCCCCACAGACatttgaatct ... tatatgatacATTTGAATCAGGTATTTATGTCGTAGAATATTTTCTTGCATCCAAAATCCC
EST: gi|110362919|gb|EC926479.1|EC926479
EST:     CTTCTAATAGGATAAGATGTTGCTATTGCATCATGGCTATCCCCACAGAC                         ATTTGAATCAGGTATTTATGTCGTAGAATATTTTCTTGCATCCAAAATCCC
genomic: CTTCTAATAGGATAAGATGTTGCTATTGCATCATGGCTATCCCCACAGACatttgaatct ... tatatgatacATTTGAATCAGGTATTTATGTCGTAGAATATTTTCTTGCATCCAAAATCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttgaatcttatatatgatacATTTGAATCAGGTATTTATGTCGTAGAATATTTTCTTGCATCCAAAATCCCTGGCAAGGAAAAAATATAGCATTTTCTTATCACATATGGACATGACAGC
                                                                                                   tttgaatcttatatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atttgaatcttatatatgatacATTTGAATCAGGTATTTATGTCGTAGAATATTTTCTTGCATCCAAAATCCCTGGCAAGGAAAAAATATAGCATTTTCTTATCACATATGGACATGACAGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA