Sequence
atgc intronic sequence ATGC exonic sequencegtatgtaaggagtttttgtatggcctgggctgagaatcttttaccagagttttctcttttggttgtttttatcattggaattagGATGACTATGCTGTGGATGATGATCAATATGAAGAAAAACTGAAGAAAGAGGCTTTGGCTTTTTTCATGTTGGCCAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g07630.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA14G36070.1 (Glycine max), 3'ss of exon 2
-------gt-atgtaaggagtttttgtatgg----cctgggctg-agaatct--tttaccagagttttctcttttggttgtt-tttatcattggaattagGATGACTATGCTGTGGATGATGATCAATATGAAGAAAAACTGAAGAAAGAGGCTTTGGCTTTTTTCATGTTGGCCAC
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ggaactagtgacctgtggaattattctatagaaactccaaatggtaaaatgtagcttactggatgtggcttaagtatttgatgtatataaattgaactagGATGACTATGCAATGGATGATGATCAATATGAAGAGAAGCTGAAGAAAGAGTCACTTGCATTTTTCATGTTGGCAAC
upper sequence: Vv18s0001g07630.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA04G10200.1 (Glycine max), 3'ss of exon 2
-----gtatgtaaggagtttttgtatgg-----------cctgggctgagaatcttttaccagagttttctcttttggttgtttttatcattggaattagGATGACTATGCTGTGGATGATGATCAATATGAAGAAAAACTGAAGAAAGAGGCTTTGGCTTTTTTCATGTTGGCCAC
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ctagaagacttttggtatcattgtacaggaagtcaggaacttcaatataaaatttaggtttagcttagtgtctgactgacgtatatttaatttgaactagGATGACTATGCAGCGGATGATGATCAATATGAGGAGAAGCTGAAGAAAGAGACTGTTGCATTTTTCATGCTGGCAAC
upper sequence: Vv18s0001g07630.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA02G37850.1 (Glycine max), 3'ss of exon 2
-------gt-atgtaaggagtttttgtatgg-----cctgggctgagaatct--tttaccagagttttctcttttggttgtttt-tatcattggaattagGATGACTATGCTGTGGATGATGATCAATATGAAGAAAAACTGAAGAAAGAGGCTTTGGCTTTTTTCATGTTGGCCAC
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caaactagtgactcgtggaattattctatagaaactccaaaaggtaaaatgtagctaactggatgtggcttaagtatttgatgtatataaattgatctagGATGACTATACAATGGATGATGATCAATATGAAGAGAAGCTGAAGAAAGAGTCAGTTGCATTTTTCAT---------
upper sequence: Vv18s0001g07630.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA06G10180.1 (Glycine max), 3'ss of exon 2
------------------------------------------------------------------------------------------------------------gtatgtaaggagtttttgtat----ggcctgggctgagaatcttttaccagagttttctcttttggttg---tttttatcattggaattagGATGACTATGCTGTGGATGATGATCAATATGAAGAAAAACTGAAGAAAGAGGCTTTGGCTTTTTTCATGTTGGCCAC
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gtaagttggattgaaatgaaattttggccatccctacattctggtcatagatttgtgggtcaaacattttctttgaaatatttgattcctcactaagagagttctagaaggtttttggtatcattgtacaggaagtcaggaatttcaatttaaaatttaggtttggcttagtgtctgacatatatttaatttgaactagGATGACTATGCAGCGGATGATGATCAATATGAGGAGAAGCTCAAGAAAGAGACTCTTGCATTTTTCATGCTGGCAAC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctgagaatcttttaccagagttttctcttttggttgtttttatcattggaattagGATGACTATGCTGTGGATGATGATCAATATGAAGAAAAACTGAAGAAAGAGGCTTTGGCTTTTTTCATGTTGGCCAC
ttgtttttatcatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtaaggagtttttgtatggcctgggctgagaatcttttaccagagttttctcttttggttgtttttatcattggaattagGATGACTATGCTGTGGATGATGATCAATATGAAGAAAAACTGAAGAAAGAGGCTTTGGCTTTTTTCATGTTGGCCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG