Sequence
atgc intronic sequence ATGC exonic sequence...tgaggagtaaatttacttcaaggattctaagattcatcatgtaccattgttgtgaggaattgactatatctgaacttgctatttaattcttgttatatagGAATTGGATGGACATCATGGAAGAAAAGGTGGTTTATTTTAACACGTACATCGTTGGTTTTCTTTAGAAGTGATCCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g07310.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G019153_T01 (Zea mays), 3'ss of exon 4
---------------------------------------------------------------------------------tgaggagtaaatttacttcaag---gattctaagattcatcatg-taccattg-ttgtgaggaattgactatatctgaacttgctatttaattcttgttatatagGAATTGGATGGACATCATGGAAGAAAAGGTGGTTTATTTTAACACGTACATCGTTGGTTTTCTTTAGAAGTGATCCA
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gtttgttaactttgcttttgcaattaaattcagttcttcgtttgccattcatcttacacttttgtgaagcaatttttacttttactagaaaatacgcattatgttgaaatcaaggtttcaggacaatagcttggattcttacgaatt-attatttctttctttttcctgtttctctttgattaaagGAATTGGGTGGACGTCATGGAAGAAAAGATGGTTTATTTTGACACATACTTCGTTGGTTTTCTTTAGAAGCGACCCT
upper sequence: Vv18s0001g07310.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA06G09860.1 (Glycine max), 3'ss of exon 4
tgaggagtaaatttacttcaaggattctaagattcatcatgtaccattgttgtgaggaattgacta------tatctgaacttgctatttaattcttgttatatagGAATTGGATGGACATCATGGAAGAAAAGGTGGTTTATTTTAACACGTACATCGTTGGTTTTCTTTAGAAGTGATCCA
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-----aatatgtataatgctggaatgcaaaactagatt-tctactcttggaagaaggagtttgtgaggtcattattattgcatagtgtgtatttattgacttgtagGAATTGGATGGACATCCTGGAAGAAAAGGTGGTTTATTTTAACACAGACTTCACTTGTTTTCTTCAGAAGTGATCCA
upper sequence: Vv18s0001g07310.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA04G09780.1 (Glycine max), 3'ss of exon 1
tgaggagtaaatttacttcaaggattctaagattcatcatgtaccattgttgtgaggaattgacta------tatctgaacttgctatttaattcttgttatatagGAATTGGATGGACATCATGGAAGAAAAGGTGGTTTATTTTAACACGTACATCGTTGGTTTTCTTTAGAAGTGATCCA
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-----aatatgtataatgctggaatgcaaaactagatt-tgtactattggaagaaggagtttgtgaggtcattattattgcctagtgtgtatttcttgacttgtagGAATTGGGTGGACATCCTGGAAGAAAAGGTGGTTTATTTTAACACAAACTTCACTTGTTTTCTTCAGAAGTGATCCA
upper sequence: Vv18s0001g07310.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT4G24580.1 (Arabidopsis thaliana), 3'ss of exon 3
tgaggagtaaatttacttcaaggattctaagattcatcatgtacca--ttgttgtgaggaattgactatatctgaacttgctatttaattcttgttatatagGAATTGGATGGACATCATGGAAGAAAAGGTGGTTTATTTTAACACGTACATCGTTGGTTTTCTTTAGAAGTGATCCA
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-atacaacgacagcactagcacaattcactaggcta-catgtcctggtctgtggctatgtcttaaaattgtctctcaccactttctatttcgtttaatacagGGATTGGCTGGACATCATGGAAGAAAAGATGGTTTATTTTGACGCGTACTTCACTAGTTTTCTTTCGAAGTGACCCG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attgttgtgaggaattgactatatctgaacttgctatttaattcttgttatatagGAATTGGATGGACATCATGGAAGAAAAGGTGGTTTATTTTAACACGTACATCGTTGGTTTTCTTTAGAAGTGATCCA
ttcttgtt CT-rich tract
tatttaattcttgtta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgaggagtaaatttacttcaaggattctaagattcatcatgtaccattgttgtgaggaattgactatatctgaacttgctatttaattcttgttatatagGAATTGGATGGACATCATGGAAGAAAAGGTGGTTTATTTTAACACGTACATCGTTGGTTTTCTTTAGAAGTGATCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - -catgtac
- - - - - - - - - - - - - - - - - - - - - - - -tgttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgcta