1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttttcttccttcatcgtcttcagttttttcgttgttcctttctaattatcatttcatttctagctcttcctgatgcttgtattcctccttccaatgacagGTAGCAACCTCTTCCTTGTCCACCTTGTCTAGATTTCCATGGGGATCAAGATCACTATCAGACAGTTCACAAAGCGAAGAGGCCACCACTGTAGATCCCC
species | Vitis vinifera |
transcript | Vv18s0001g06900.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCAGGAGATCCTTCTCAAGAGCGGAACTACCTTTTGGAG GTAGCAACCTCTTCCTTGTCCACCTTGTCTAGATTTCCATGGGGATCAAGAEST: gi|352772878|gb|FQ470493.1|FQ470493
genomic: GCAGGAGATCCTTCTCAAGAGCGGAACTACCTTTTGGAGgtatgctctc ... ccaatgacagGTAGCAACCTCTTCCTTGTCCACCTTGTCTAGATTTCCATGGGGATCAAGA
EST: GCAGGAGATCCTTCTCAAGAGCGGAACTACCTTTTGGAG GTAGCAACCTCTTCCTTGTCCACCTTGTCTAGATTTCCATGGGGATCAAGA
genomic: GCAGGAGATCCTTCTCAAGAGCGGAACTACCTTTTGGAGgtatgctctc ... ccaatgacagGTAGCAACCTCTTCCTTGTCCACCTTGTCTAGATTTCCATGGGGATCAAGA
ttatcatttcatttctagctcttcctgatgcttgtattcctccttccaatgacagGTAGCAACCTCTTCCTTGTCCACCTTGTCTAGATTTCCATGGGGATCAAGATCACTATCAGACAGTTCACAAAGCGAAGAGGCCACCACTGTAGATCCCC
tcctgat putative branch site (score: 3)
cttgtattcctccttc CT-rich tract
atttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttcttccttcatcgtcttcagttttttcgttgttcctttctaattatcatttcatttctagctcttcctgatgcttgtattcctccttccaatgacagGTAGCAACCTCTTCCTTGTCCACCTTGTCTAGATTTCCATGGGGATCAAGATCACTATCAGACAGTTCACAAAGCGAAGAGGCCACCACTGTAGATCCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - -ccttcat
- - - - - - - - - - - - - - - - - -tcctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcctcct