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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattaaactagtttaatgcacattccaacacatattagtttgggtcaataaggtgtagtgtagattcttcataaacaatacttttagaatacttcagtttacaggtcttcatctttcctgcaattgtatatgaccctttaatgattagcataagttttctttgcagGCATATGATCTTGTTCAAGGACCACTT

Basic information

species Vitis vinifera
transcript Vv18s0001g06010.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g06010.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT4G10030.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaattaaactagtttaatgcacattccaacacatattagtttgggtcaataaggtgtagtgtagattcttcataaacaatacttttagaatacttcagtttacaggtcttcatctttcctgcaattgtatatgaccctttaatgattagcataagttttctttgcagGCATATGATCTTGTTCAAGGACCACTT
                                                                         || | ||   ||     | |||| |    |||  | || || |    |   || |  | |||   || | |   |    |    ||  ||||||||| |||||||||||||||||| |||||
------------------------------------------------------------------------gtacataaagttt----gagacttga----acacattttgatgtgaattc--atggactttgatgattgattatatcttgtgccattgttttgcagGCGTATGATCTTGTTCAAGGAGCACTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352776833|gb|FQ472720.1|FQ472720
EST:     ATGAGAGGGTTGCACATGGTAGAAATCTGGCAAAACCTTCCAGAATTTTG                         GCATATGATCTTGTTCAAGGACCACTT
genomic: ATGAGAGGGTTGCACATGGTAGAAATCTGGCAAAACCTTCCAGAATTTTGgtaattaaac ... ttctttgcagGCATATGATCTTGTTCAAGGACCACTT
EST: gi|352773576|gb|FQ472358.1|FQ472358
EST:     ATGAGAGGGTTGCACATGGTAGAAATCTGGCAAAACCTTCCAGAATTTTG                         GCATATGATCTTGTTCAAGGACCACTT
genomic: ATGAGAGGGTTGCACATGGTAGAAATCTGGCAAAACCTTCCAGAATTTTGgtaattaaac ... ttctttgcagGCATATGATCTTGTTCAAGGACCACTT
EST: gi|352769737|gb|FQ468665.1|FQ468665
EST:     ATGAGAGGGTTGCACATGGTAGAAATCTGGCAAAACCTTCCAGAATTTTG                         GCATATGATCTTGTTCAAGGACCACTT
genomic: ATGAGAGGGTTGCACATGGTAGAAATCTGGCAAAACCTTCCAGAATTTTGgtaattaaac ... ttctttgcagGCATATGATCTTGTTCAAGGACCACTT
EST: gi|352768560|gb|FQ467516.1|FQ467516
EST:     ATGAGAGGGTTGCACATGGTAGAAATCTGGCAAAACCTTCCAGAATTTTG                         GCATATGATCTTGTTCAAGGACCACTT
genomic: ATGAGAGGGTTGCACATGGTAGAAATCTGGCAAAACCTTCCAGAATTTTGgtaattaaac ... ttctttgcagGCATATGATCTTGTTCAAGGACCACTT
EST: gi|352781488|gb|FQ468332.1|FQ468332
EST:     ATGAGAGGGTTGCACATGGTAGAAATCTGGCAAAACCTTCCAGAATTTTG                         GCATATGATCTTGTTCAAGGACCACTT
genomic: ATGAGAGGGTTGCACATGGTAGAAATCTGGCAAAACCTTCCAGAATTTTGgtaattaaac ... ttctttgcagGCATATGATCTTGTTCAAGGACCACTT
EST: gi|352781638|gb|FQ468936.1|FQ468936
EST:     ATGAGAGGGTTGCACATGGTAGAAATCTGGCAAAACCTTCCAGAATTTTG                         GCATATGATCTTGTTCAAGGACCACTT
genomic: ATGAGAGGGTTGCACATGGTAGAAATCTGGCAAAACCTTCCAGAATTTTGgtaattaaac ... ttctttgcagGCATATGATCTTGTTCAAGGACCACTT
EST: gi|352781598|gb|FQ468896.1|FQ468896
EST:     ATGAGAGGGTTGCACATGGTAGAAATCTGGCAAAACCTTCCAGAATTTTG                         GCATATGATCTTGTTCAAGGACCACTT
genomic: ATGAGAGGGTTGCACATGGTAGAAATCTGGCAAAACCTTCCAGAATTTTGgtaattaaac ... ttctttgcagGCATATGATCTTGTTCAAGGACCACTT
EST: gi|352776761|gb|FQ472648.1|FQ472648
EST:     ATGAGAGGGTTGCACATGGTAGAAATCTGGCAAAACCTTCCAGAATTTTG                         GCATATGATCTTGTTCAAGGACCACTT
genomic: ATGAGAGGGTTGCACATGGTAGAAATCTGGCAAAACCTTCCAGAATTTTGgtaattaaac ... ttctttgcagGCATATGATCTTGTTCAAGGACCACTT
EST: gi|71873371|gb|DT022426.1|DT022426
EST:     ATGAGAGGGTTGCACATGGTAGAAATCTGGCAAAACCTTCCAGAATTTTG                         GCATATGATCTTGTTCAAGGACCACTT
genomic: ATGAGAGGGTTGCACATGGTAGAAATCTGGCAAAACCTTCCAGAATTTTGgtaattaaac ... ttctttgcagGCATATGATCTTGTTCAAGGACCACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttcctgcaattgtatatgaccctttaatgattagcataagttttctttgcagGCATATGATCTTGTTCAAGGACCACTT
                        ctttaat  putative branch site (score: 4)
                                           ttttctttgc  putative PPT
                         tttaatgatta  TA-rich tract