1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...actatatgatacaaatgcttaacttagttatgtttttgaacttatcaaatatggcaatgcataaaacagtacatttttttcttattttgcaaggttatagTGGGGAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTAACA
species | Vitis vinifera |
transcript | Vv18s0001g03150.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AATACCCAGGAAGAACAGTTACATTGGAGCCTGCTGAAGGAGAGATCTGC TGGGGAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTAEST: gi|110371933|gb|EC936069.1|EC936069
genomic: AATACCCAGGAAGAACAGTTACATTGGAGCCTGCTGAAGGAGAGATCTGCgtgagttcct ... aaggttatagTGGGGAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTA
EST: AATACCCAGGAAGAACAGTTACATTGGAGCCTGCTGAAGGAGAGATCTGC TGGGGAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTAEST: gi|71873170|gb|DT022225.1|DT022225
genomic: AATACCCAGGAAGAACAGTTACATTGGAGCCTGCTGAAGGAGAGATCTGCgtgagttcct ... aaggttatagTGGGGAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTA
EST: AATACCCAGGAAGAACAGTTACATTGGAGCCTGCTGAAGGAGAGATCTGC TGGGGAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTAEST: gi|110709129|gb|EE084317.1|EE084317
genomic: AATACCCAGGAAGAACAGTTACATTGGAGCCTGCTGAAGGAGAGATCTGCgtgagttcct ... aaggttatagTGGGGAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTA
EST: AATACCCAGGAAGAACAGTTACATTGGAGCCTGCTGAAGGAGAGATCTGC TGGGGAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTAEST: gi|110382676|gb|EC946993.1|EC946993
genomic: AATACCCAGGAAGAACAGTTACATTGGAGCCTGCTGAAGGAGAGATCTGCgtgagttcct ... aaggttatagTGGGGAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTA
EST: AATACCCAGGAAGAACAGTTACATTGGAGCCTGCTGAAGGAGAGATCTGC TGGGGAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTAEST: gi|27580878|gb|CB003573.1|CB003573
genomic: AATACCCAGGAAGAACAGTTACATTGGAGCCTGCTGAAGGAGAGATCTGCgtgagttcct ... aaggttatagTGGGGAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTA
EST: AATACCCAGGAAGAACAGTTACATTGGAGCCTGCTGAAGGAGAGATCTGC TGGGGAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTAEST: gi|30321569|gb|CD004831.1|CD004831
genomic: AATACCCAGGAAGAACAGTTACATTGGAGCCTGCTGAAGGAGAGATCTGCgtgagttcct ... aaggttatagTGGGGAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTA
EST: AATACCCAGGAAGAACAGTTACATTGGAGCCTGCTGAAGGAGAGATCTGC TGGGGAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTAEST: gi|27580470|gb|CB003165.1|CB003165
genomic: AATACCCAGGAAGAACAGTTACATTGGAGCCTGCTGAAGGAGAGATCTGCgtgagttcct ... aaggttatagTGGGGAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTA
EST: AATACCCAGGAAGAACAGTTACATTGGAGCCTGCTGAAGGAGAGATCTGC TGGGGAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTAEST: gi|27581639|gb|CB004334.1|CB004334
genomic: AATACCCAGGAAGAACAGTTACATTGGAGCCTGCTGAAGGAGAGATCTGCgtgagttcct ... aaggttatagTGGGGAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTA
EST: AATACCCAGGAAGAACAGTTACATTGGAGCCTGCTGAAGGAGAGATCTGC TGGGGAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTA
genomic: AATACCCAGGAAGAACAGTTACATTGGAGCCTGCTGAAGGAGAGATCTGCgtgagttcct ... aaggttatagTGGGGAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTA
caaatatggcaatgcataaaacagtacatttttttcttattttgcaaggttatagTGGGGAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTAACA
ataaaacagtacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actatatgatacaaatgcttaacttagttatgtttttgaacttatcaaatatggcaatgcataaaacagtacatttttttcttattttgcaaggttatagTGGGGAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - atacaaa
- - - - - - - - - - - - - - - - - - - - - -atcaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - caatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaacag