Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaggtttagaatgtgttgttataaacacatcattgctttttcatcagctctgatattatttatattactgtatgatacttgtttctgattcagatatgttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGGCTTCTTTGGTACCCATTGTTGGAGGAATTCTTCTTACATCTGTCACAGA

Basic information

species Vitis vinifera
transcript Vv18s0001g02970.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g02970.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G040033_T01 (Zea mays), 3'ss of exon 2
gtcaggtttagaatgtgttgttataaacacatcattgctttttcatcagctctgatattatttatattactgtatgatacttgttt-ctgattcagatatgt-tttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGGCTTCTTTGGTACCCATTGTTGGAGGAATTCTTCTTACATCTGTCACAGA
                           ||  | |||| ||||   |    |  |||   |    |   |||| || |   |  ||  |    |||  | | | | |   |||| ||| | |||||| |||||||||| ||||||||||| ||||| || ||||| || ||||| ||||| ||||||||||| ||| | || || || || ||
-------------------------gtcagttaattggttttgtctt---ttcgat-ccaccattgagactg-ataacgatcattcaccagctcatttgtctgtctttccagTGGTTCTTCAGTGGCTGGTTTGGAGGAAATACTTTGAGTGGCGCATCTGGGCGTCCTTGGTGCCCATCGTTGGAGGAATCCTTGTCACCTCCGTGACGGA

upper sequence: Vv18s0001g02970.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA13G03210.1 (Glycine max), 3'ss of exon 3
gtcaggtttagaatgtgttgttataaacacatcattgctttttcatcagctctgatattatttatattactgtatgatacttgtttctgattcagatatgttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGGCTTCTTTGGTACCCATTGTTGGAGGAATTCTTCTTACATCTGTCACAGA-------------------------
                                                | |||| | |   || |  |  || | || | ||   ||||||   | |    ||    ||||||||||||| ||| | |||||||| ||||| ||||| ||||| |||||||||||| |  |||||||||||||||| |||||||| |||||||| |||||                         
------------------------------------------------gttctgctttatgttgtgat-ttgaaggacattttcatctgatcttggtgaaattccg-cagttgttttgcaatggctagtttggagGAAATATTTTGACTGGCGTATTTGGGCTTCTCTTATACCCATTGTTGGAGGGATTCTTCTCACATCTGTTACAGAGCTTAGCTTTAATGCATTTGGGTTT

upper sequence: Vv18s0001g02970.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA04G42900.1 (Glycine max), 3'ss of exon 2
gtcaggtttagaatgtgttgttataaacacatcattgctttttcatcagctctgatattatttatattactgtatgatacttgtttctgattcagatatgttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGGCTTCTTTGGTACCCATTGTTGGAGGAATTCTTCTTACATCTGTCACAGA
   |||||||  |   | |||||     ||||   |||  | |  |     |     |||| | |   |||  | |||| ||   |||||||  | |    |    |||||||||||||| ||| | || ||||| || || ||||| ||||| |||||||||||| |  |||||||||||||||| |||||||| |||||||| |||||
-gtaggtttaataatcggtgtta-----acatttctgccatatatttgctacctgctttatat-tgagacttaaggatatttacatctgattttggtgaactg-gcacagTTGTTTTGCAATGGCTAGTGTGGAGGAAGTATTTTGACTGGCGTATTTGGGCTTCTCTTATACCCATTGTTGGAGGGATTCTTCTCACATCTGTAACAGA

upper sequence: Vv18s0001g02970.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA06G11850.1 (Glycine max), 3'ss of exon 2
gtcaggtttagaatgtgttgttataaacacatcattgctttttcatcagctctgatattatttatattactgtatgatacttgtttctgattcagatatgttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGGCTTCTTTGGTACCCATTGTTGGAGGAATTCTTCTTACATCTGTCACAGA
   |||||||  |   | |||||     ||||   |||    |  |     |     |||| | |   |||  | |||| ||   ||||||   | |    |    |||||||||||||| ||| | || ||||| || || ||||| ||||| |||||||||||| | ||||| ||||||||||| |||||||| |||||||| |||||
-gtaggtttattaatcggtgtta-----acatttctgccacatatttgctacctgctttatat-tgagacttgaggatatttacatctgatattggtgaactg-gcacagTTGTTTTGCAATGGCTAGTGTGGAGGAAGTATTTTGACTGGCGTATTTGGGCTTCTCTTGTACCTATTGTTGGAGGGATTCTTCTCACATCTGTAACAGA

upper sequence: Vv18s0001g02970.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA14G23570.1 (Glycine max), 3'ss of exon 2
gtcaggtttagaatgtgttgttataaacacatcattgctttttcatcagctctgatattatttatattactgtatgatacttgtttctgattcagatatgttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGGCTTCTTTGGTACCCATTGTTGGAGGAATTCTTCTTACATCTGTCACAGA
                  |   || || |  |  ||    | |  |    | || | | ||||  |||  || | || | ||   |||||||  | |    ||    ||||||||||||| ||| | |||||||| ||||| ||||| ||||| |||||||||||| |  | |||||||||||||| |||||||| || ||||| |||||
-----------------gtaagattaatagttggttctggtgttctgctttatgttgtgatttgaatt-ttgaaggacattttcatctgattttggtgaacttctg-cagTTGTTTTGCAATGGCTAGTTTGGAGGAAATATTTTGACTGGCGTATTTGGGCTTCTCTTATCCCCATTGTTGGAGGGATTCTTCTCACGTCTGTTACAGA

upper sequence: Vv18s0001g02970.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT1G77610.1 (Arabidopsis thaliana), 3'ss of exon 2
gtcaggtttagaatgtgttgttataaacacatcattgctttttcatcagctctgatattatttatat-tactgtatgatacttgtttctgattcagatatgttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGGCTTCTTTGGTACCCATTGTTGGAGGAATTCTTCTTACATCTGTCACAGA
                |||    |   || ||      |||   ||  |   |||||||  |  | | || ||| | ||   ||||||| ||  | || |   || | ||||||| || |||||| |||| ||||| ||||||||||| ||||| |||||||| ||| | || || |||||||| ||||||||||| |||||||| || ||
----------------gttagggttttcagatggaaagtttcctatttg---tgatatttctattgtctattgtctaat---tgtttcttatgtatatgt---ttgagcagTTGTGTTACAGTGGCTGGTATGGAGGAAATACTTTGACTGGCGTATTTGGGCGTCTCTCGTGCCTATTGTTGGTGGAATTCTTCTGACATCTGTGACTGA

upper sequence: Vv18s0001g02970.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT1G21870.1 (Arabidopsis thaliana), 3'ss of exon 2
gtcaggtttagaatgtgttgttataaacacatcattgctttttcatcagctctgatattatttatattactgtatgatacttgtttctgattcagatatgttttaaa--cagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGGCTTCTTTGGTACCCATTGTTGGAGGAATTCTTCTTACATCTGTCACAGA
     ||||||     ||| || |||    ||      |||||||  |    | |  | |||| | ||  | | |  |  ||| || |  |  |    | |||| |   ||||||| || |||||| |||| ||||| ||||| ||||| ||||| |||||||| || ||||| || ||||||||||| ||||||||||| ||| | |||||
-----gtttagg----gtttttttaag---attgagaatttttcaaaa----taaagtgatttttttttat-tgttctgattggtttttgtgtaatggttttttgagtgcagTTGTGTTACAGTGGTTGGTATGGAGGAAATATTTTGATTGGCGTATTTGGGCGTCATTGGTGCCTATTGTTGGAGGGATTCTTCTTACTTCTATTACAGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351044447|gb|FQ442978.1|FQ442978
EST:     TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
EST: gi|349808343|gb|FQ405487.1|FQ405487
EST:     TCCAGTTTCTTTTATGCGGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGTGGATGGTTTGGAGAAAATACTT
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTT
EST: gi|352790597|gb|FQ478236.1|FQ478236
EST:     TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
EST: gi|349822437|gb|FQ412701.1|FQ412701
EST:     TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
EST: gi|351048641|gb|FQ448915.1|FQ448915
EST:     TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
EST: gi|349809118|gb|FQ398915.1|FQ398915
EST:     TCCAGTTTCTTTTATGCAGACTATAACGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGTGGATGGTTTGAAGAAAATACTTTGAATGGCGAATTTGGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
EST: gi|351014131|gb|FQ434720.1|FQ434720
EST:     TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTT-GCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGG
EST: gi|110367070|gb|EC930991.1|EC930991
EST:     TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
EST: gi|349814583|gb|FQ399223.1|FQ399223
EST:     TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
EST: gi|351035689|gb|FQ463534.1|FQ463534
EST:     TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
EST: gi|349814841|gb|FQ410064.1|FQ410064
EST:     TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
EST: gi|349813851|gb|FQ414085.1|FQ414085
EST:     TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
EST: gi|349824776|gb|FQ414634.1|FQ414634
EST:     TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
EST: gi|349820252|gb|FQ406928.1|FQ406928
EST:     TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACTACAG                         TTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
EST: gi|349821022|gb|FQ404275.1|FQ404275
EST:     TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGC
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
EST: gi|351031988|gb|FQ460245.1|FQ460245
EST:     TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
EST: gi|349815034|gb|FQ410257.1|FQ410257
EST:     TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
EST: gi|349819066|gb|FQ411761.1|FQ411761
EST:     TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
EST: gi|351044732|gb|FQ448986.1|FQ448986
EST:     TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
EST: gi|351027605|gb|FQ446769.1|FQ446769
EST:     TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
EST: gi|351035083|gb|FQ458440.1|FQ458440
EST:     TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
EST: gi|349814967|gb|FQ410190.1|FQ410190
EST:     TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
EST: gi|351038213|gb|FQ460905.1|FQ460905
EST:     TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
EST: gi|349822839|gb|FQ398226.1|FQ398226
EST:     TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
EST: gi|349808296|gb|FQ403483.1|FQ403483
EST:     TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGTGGATGGTTTGGAGAAAAATACTTTGAATGGCGAATTTGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAA-TACTTTGAATGGCGAATTTGG
EST: gi|349825076|gb|FQ415623.1|FQ415623
EST:     TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
EST: gi|349817210|gb|FQ405215.1|FQ405215
EST:     TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
EST: gi|351044612|gb|FQ443143.1|FQ443143
EST:     TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
EST: gi|349808832|gb|FQ406682.1|FQ406682
EST:     TCCCGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTTGA-TGGCGAATTTGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTT-GAATGGCGAATTTGG
EST: gi|110713836|gb|EE090104.1|EE090104
EST:     TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTTGCA-TGAATGGTTTGGAGAAAA-ACCTTGAATGGCGAATTTGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTT-GCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGG
EST: gi|351048025|gb|FQ441197.1|FQ441197
EST:     TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
EST: gi|352790492|gb|FQ478132.1|FQ478132
EST:     TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
EST: gi|349814053|gb|FQ414311.1|FQ414311
EST:     TTCAGTTTCTTTTATGCAGACTATAAGGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTTGA-TGGCGCAATTTG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTT-GAATGGCG-AATTTG
EST: gi|349819896|gb|FQ404618.1|FQ404618
EST:     TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
EST: gi|349818919|gb|FQ411614.1|FQ411614
EST:     TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
EST: gi|349825077|gb|FQ415624.1|FQ415624
EST:     TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
EST: gi|349819666|gb|FQ402603.1|FQ402603
EST:     TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
EST: gi|351023618|gb|FQ447172.1|FQ447172
EST:     TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGTGGATGGTTTGGAGAAA-TACTTTGAATGGCGAATTTGGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
EST: gi|349811250|gb|FQ406238.1|FQ406238
EST:     TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
EST: gi|351052146|gb|FQ450716.1|FQ450716
EST:     TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGCGGATGGTTTGGAGAANATACTTTGAATGGCGAATTTGGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
EST: gi|351027631|gb|FQ446795.1|FQ446795
EST:     TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
EST: gi|349820607|gb|FQ404102.1|FQ404102
EST:     TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
EST: gi|351035725|gb|FQ463570.1|FQ463570
EST:     TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
EST: gi|349809911|gb|FQ398536.1|FQ398536
EST:     TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
EST: gi|351035168|gb|FQ458525.1|FQ458525
EST:     TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAG                         TTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG
genomic: TCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcaggttta ... ttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattatttatattactgtatgatacttgtttctgattcagatatgttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGGCTTCTTTGGTACCCATTGTTGGAGGAATTCTTCTTACATCTGTCACAGA
                             ttctgat  putative branch site (score: 3)
     tttatattactgtat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcaggtttagaatgtgttgttataaacacatcattgctttttcatcagctctgatattatttatattactgtatgatacttgtttctgattcagatatgttttaaacagTTGTTTTGCAGTGGATGGTTTGGAGAAAATACTTTGAATGGCGAATTTGGGCTTCTTTGGTACCCATTGTTGGAGGAATTCTTCTTACATCTGTCACAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA