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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acttctctcccctcccccctcatttgaaatgaaacatcaaatcctccattgatggtgttgtatatgtttaccttttttcccctgttgggattattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCATCTTTGCTGAAGCGCTTGCTCTTTATGGCCTGATTGTCGGCATCATTCTT

Basic information

species Vitis vinifera
transcript Vv18s0001g02650.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g02650.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os05g01560.1 (Oryza sativa), 3'ss of exon 2
--acttctctcccctcccccctcatttgaaatgaaacatcaaatcctccattgatggtgttgtatatgtttaccttttttcccctgttgggattattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCATCTTTGCTGAAGCGCTTGCTCTTTATGGCCTGATTGTCGGCATCATTCTT
  | |              | |  | |    |   |    || |    || |  || |  || |     ||  | |||    |  |||    |  | | |||||| ||||| |||||||||||| |||| ||||| ||||| |||||||| |||||||| ||||| |||||||| |||||||||||||| || ||||| || 
aaaatagcagatagagtttctttctatctgttactattgtaagtaaagcactcttgtt--tgcaggaaattgacatttggttctggtttacctcctctgcagGGCCAATGCGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTATCTTTGCAGAAGCTCTTGCTCTGTATGGCCTGATTGTTGGTATCATCCTC

upper sequence: Vv18s0001g02650.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os02g34510.1 (Oryza sativa), 3'ss of exon 1
acttctctcccctcccccctcatttgaaatgaaacatcaaatcctccattgatggtgttgtatatgtttaccttttttcccctg--ttgggattattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCATCTTTGCTGAAGCGCTTGCTCTTTATGGCCTGATTGTCGGCATCATTCTT
   | ||    | |      ||  |  | || |||  ||     |    |  |  || | |   || |   || || |  | |    |    ||  | ||||||| ||||| || |||||||| ||||||||||||||||| |||||||| |||||||| ||||||||||| || ||||| || ||||| || |||||  | 
--atttcatgacactttgtgcagcttgattggaaccacaggaattttgatttttatgctttgcttggtgcgctgttctaacataatctacttttgctctcagGGCAAATGCTCAACAGCCAAAACTGTTTGTGGGTATGATCCTCATCCTTATCTTTGCGGAAGCGCTTGCACTCTATGGTCTCATTGTTGGTATCATCTTG

upper sequence: Vv18s0001g02650.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os11g06890.1 (Oryza sativa), 3'ss of exon 2
acttctctcccctcccccctcatttgaaatgaaacatcaaatcctccattgatggtgttgtatatgtttacc-ttttttcccctgttgggattattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCATCTTTGCTGAAGCGCTTGCTCTTTATGGCCTGATTGTCGGCATCATTCTT
 | ||  |   |    |   | ||||   ||| |  |  |  |  |   | |      |   |  | ||||  || |     || |||    | ||  |||||| ||||||||||| |||||||| || ||||| ||||| ||||||||||| || || ||||||||||| || ||||| || ||||| |||||||| || 
-cctcggtgttcatgactaccctttgtgttgagagcttgaggctactcctaagctgcctactttggattacaattctgatatctcttgttggtgttggcagGGCAAATGCACAGCAACCAAAGCTTTTCGTGGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCCCTGTATGGTCTCATTGTGGGCATCATCCTC

upper sequence: Vv18s0001g02650.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G028432_T01 (Zea mays), 3'ss of exon 1
-acttctctcccctcccccctcatttgaaatgaaacatcaaatcctccattgatggtgttgtatatgtttaccttttttcccctgttgggattattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCATCTTTGCTGAAGCGCTTGCTCTTTATGGCCTGATTGTCGGCATCATTCTT
 ||||     |    ||  ||      ||  | |   ||||     |          |  |   |  | | |||  |     |  |||   || |   |||||| || || ||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| || || || || || || ||||||||||| || 
cacttaaacacttgtcctacttgggaaaatcggattgtcaaccgggctggctgcctagacggcgacatct-cctcatcctgacacttgttcttttgcgcagGGCGAACGCTCAGCAGCCAAAGCTGTTTGTGGGCATGATCCTCATCCTCATCTTCGCTGAAGCGCTCGCCCTATACGGTCTCATCGTCGGCATCATCCTC

upper sequence: Vv18s0001g02650.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM5G893252_T01 (Zea mays), 3'ss of exon 2
acttctctcccctcccccctcatttgaaa-tgaaacatcaaatcctccattgatggtgttgtatatgtttacctttttt--cccctgttgggattattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCATCTTTGCTGAAGCGCTTGCTCTTTATGGCCTGATTGTCGGCATCATTCTT
   |||||       ||     |||| |  | |||| ||||||  |     |   ||  |  | ||||    ||| | |    |   ||    |  | | |||||| |||||||||||||||||| |||||||||| |||||||| ||||| ||||| || ||||| |||||||| || || || || ||||| |||||||| 
---tctcttatacagccaaatttttgcaccttaaacctcaaattatatccagcccgttgtcaacatgtcattcttatctaattctgatttatgtcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTATCTTCGCAGAAGCTCTTGCTCTGTACGGTCTCATCGTCGGTATCATTCTC

upper sequence: Vv18s0001g02650.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AC216067.3_FGT002 (Zea mays), 3'ss of exon 2
-----acttctctcccctcccccctcatttgaaatgaaacatcaaatcctccattgatggtgttgtatatgtttaccttttttcccctgttgggattattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCATCTTTGCTGAAGCGCTTGCTCTTTATGGCCTGATTGTCGGCATCATTCTT
      | | |||     |    ||  ||| ||  ||  ||  | || ||   |||    | |   || |  ||  ||| ||| |   |     | |  ||||||||| |||||||| ||||| ||||| |||||||| ||||| ||||||||||| || || |||||||||||||| || || || ||||| || || || |||
taatctcctttctttgagcgtttcttcttttaag-gaggcagtacatgcttatttgggaat-tgaaattttattgacttattttctgggcc---actgatttcagGGCGAATGCACAACAGCCGAAGCTTTTTGTGGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTGTACGGTCTCATTGTTGGAATTATCCTT

upper sequence: Vv18s0001g02650.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 2
acttctctcccctcccccctcatttgaaatgaaacatcaaatcctccattgatggtgttgtatatg---tttaccttttttcccctgttggg--attattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCATCTTTGCTGAAGCGCTTGCTCTTTATGGCCTGATTGTCGGCATCATTCTT
   |  ||| | | |  | |  |      ||     ||   |  | ||  |  ||  | | |  ||   |||   |||       | |||||  |    ||||||||| ||||| || ||||||||||| || || || ||||| ||||||||||| || || |||||||||||||| ||||| || ||||| || || || |||
-agtagctcacatgcaactttctcc----tggcgtttcttcttttacagaggaggcatgggaattgaaattttagtttgactaatttttgggccaccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTCTATGGTCTAATTGTTGGAATTATCCTT

upper sequence: Vv18s0001g02650.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G101020_T01 (Zea mays), 3'ss of exon 2
---acttctctcccctcccccctcatttgaaatgaaacatcaaatcctccattgatggtgttgtatatgtttaccttttttcccctgttgggattattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCATCTTTGCTGAAGCGCTTGCTCTTTATGGCCTGATTGTCGGCATCATTCTT
   |      |  |||    |   | ||  | |   |  |  || |   |     | |      | || | | | |  |  | | ||||    || | | |||||| || || |||||||| ||| ||||||| || ||||| |||||||| || ||||||||||| ||||| || ||||| || || |||||||| || || 
ttcaaagagttgtcctagttcgaaaattatattatcaactggaacctgtctactctagaccgcaacatctctccgtcctaacacttgttc---ttttgtgcagGGCGAACGCTCAGCAGCCGAAGTTGTTTGTTGGCATGATCCTCATCCTTATTTTTGCTGAAGCACTTGCCCTCTATGGTCTCATCGTCGGCATTATCCTC

upper sequence: Vv18s0001g02650.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA14G23990.1 (Glycine max), 3'ss of exon 2
-acttctctcccctcccccctcatttgaaatgaaacatcaaatcctccattgatggtgttgtatatgtttaccttttttcccctgttgggattattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCATCTTTGCTGAAGCGCTTGCTCTTTATGGCCTGATTGTCGGCATCATTCTT
  ||| ||||  ||      |  ||||      |     |  |  |    | ||     || |||  |  ||  |   |    |  |    || || ||||||||||||| |||||||| ||||||||||| ||||||||||| ||| | || || |||||||| |||||||| |||||||| ||||| || ||||| || 
tgcttttctcagctaaattatagtttgtttcatagatctatgtaatgttattatta-actgaatacttggacgctgagtaaggtaattccttttttgtcagGGCTAATGCCCAGCAGCCGAAGCTGTTTGTTGGTATGATTCTTATCTTGATTTTCGCTGAAGCTCTTGCTCTGTATGGCCTCATTGTGGGTATCATCCTC

upper sequence: Vv18s0001g02650.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA13G03470.1 (Glycine max), 3'ss of exon 2
acttctctcccctcccccctcatttgaaatgaaacatcaaatcctccattgatggtgttgtatatgtttaccttttttcccctgttgggattattt-------tcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCATCTTTGCTGAAGCGCTTGCTCTTTATGGCCTGATTGTCGGCATCATTCTT
     ||||  ||    |   | ||    |   | ||| | |     ||  ||| | || | ||  |  |   ||   | |    |  | | |||        | || |||||||| ||||| || ||||||||||| || |||||||| ||| | || || |||||||| |||||||| |||||||| ||||| || ||||| || 
-----tctcagctaaaactatagtttgtttcgtagatcta-tgtaatatgtatgttattat-taactgaatacttgaacactgagtaaggtgattcctttttgttagAGCTAATGCCCAGCAACCGAAGCTGTTTGTTGGCATGATTCTTATCTTGATTTTCGCTGAAGCTCTTGCTCTGTATGGCCTCATTGTGGGTATCATCCTC

upper sequence: Vv18s0001g02650.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EDP08338 (Chlamydomonas reinhardtii), 3'ss of exon 3
acttctctcccctcccccctcatttgaaatgaaacatcaaatcctccattgatggtgttgtatatgtttaccttttttcccctgttgggattattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCATCTTTGCTGAAGCGCTTGCTCTTTATGGCCTGATTGTCGGCATCATTCTT
                                 |  || |  |  || |    ||  || ||  |    |   ||   |     ||    |   || ||| ||||| || ||||| || |||||||| || ||||||||||| || || || || ||||| ||||| |||||||| ||||||||||              
-------------------------------gtaagtctacgcagccttctcaggcattttaggttcagagtattaaccagtccttttcctggcttgcagCGCTAACGCCCAGCAACCCAAGCTGTTCGTCGGTATGATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG--------------

upper sequence: Vv18s0001g02650.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S1_66V6.1 (Physcomitrella patens), 3'ss of exon 2
-------------------------------------------------------------------------------acttctctcccctcccccctcatttgaaatgaaacatcaaatcctccattgatggtgttgt-atatgtttaccttttttcccctgttgggattat----tttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCATCTTTGCTGAAGCGCTTGCTCTTTATGGCCTGATTGTCGGCATCATTCTT
                                                                                | | |  |          |  | |||| ||  |      ||| |    ||    | |||| |  || |    | |||  ||   ||  | ||||     |  || || ||||| |||||||| ||||| || || ||||||||| | |||||||| ||||| || ||||||||| | ||||| || || |||||||||||  | 
gtagtaatcccgtctctacgtttttctgcatttagtatttttctttttttcttcttttttttttctgcttgatatgatttcctattgctttatttattttctgtgaattgccattatgcatcatgtgatgcaatttttgttacctgatgtattctttgaccggattatggttatacgtctgtagAGCGAATGCCCAGCAGCCCAAGCTCTTCGTTGGTATGATTTTGATCCTCATTTTTGCCGAGGCGCTTGCTTTGTATGGACTTATCGTCGGCATCATCTTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110714380|gb|EE091221.1|EE091221
EST:     GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCG                         GGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
genomic: GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCGgtaaactctt ... ttattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
EST: gi|110368873|gb|EC933007.1|EC933007
EST:     GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCG                         GGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
genomic: GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCGgtaaactctt ... ttattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
EST: gi|110391500|gb|EC956479.1|EC956479
EST:     GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCG                         GGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
genomic: GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCGgtaaactctt ... ttattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
EST: gi|110370145|gb|EC934325.1|EC934325
EST:     GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCG                         GGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
genomic: GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCGgtaaactctt ... ttattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
EST: gi|110708791|gb|EE086736.1|EE086736
EST:     GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCG                         GGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
genomic: GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCGgtaaactctt ... ttattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
EST: gi|37185866|gb|CF605219.1|CF605219
EST:     GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCG                         GGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
genomic: GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCGgtaaactctt ... ttattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
EST: gi|34319370|gb|CF372124.1|CF372124
EST:     GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCG                         GGCTAATGCACAGCAGCCAAAGCTG-TTGTGGGTATGATTCTCATCCTCAT
genomic: GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCGgtaaactctt ... ttattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
EST: gi|110377352|gb|EC942415.1|EC942415
EST:     GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCG                         GGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
genomic: GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCGgtaaactctt ... ttattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
EST: gi|110730142|gb|EE106882.1|EE106882
EST:     GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCG                         GGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
genomic: GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCGgtaaactctt ... ttattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
EST: gi|110408550|gb|EC974186.1|EC974186
EST:     GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCG                         GGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
genomic: GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCGgtaaactctt ... ttattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
EST: gi|32267695|gb|CD716658.1|CD716658
EST:     GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCG                         GGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
genomic: GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCGgtaaactctt ... ttattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
EST: gi|110426037|gb|EC992434.1|EC992434
EST:     GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCG                         GGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
genomic: GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCGgtaaactctt ... ttattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
EST: gi|110411878|gb|EC977606.1|EC977606
EST:     GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCG                         GGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTTTCATCCTCAT
genomic: GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCGgtaaactctt ... ttattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
EST: gi|110381895|gb|EC937947.1|EC937947
EST:     GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCG                         GGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
genomic: GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCGgtaaactctt ... ttattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
EST: gi|110396283|gb|EC961964.1|EC961964
EST:     GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCG                         GGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
genomic: GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCGgtaaactctt ... ttattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
EST: gi|34416192|gb|CF414946.1|CF414946
EST:     GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCG                         GGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
genomic: GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCGgtaaactctt ... ttattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
EST: gi|110384794|gb|EC949256.1|EC949256
EST:     GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCG                         GGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
genomic: GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCGgtaaactctt ... ttattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
EST: gi|30320541|gb|CD003803.1|CD003803
EST:     GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCG                         GGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
genomic: GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCGgtaaactctt ... ttattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
EST: gi|110714427|gb|EE091324.1|EE091324
EST:     GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCG                         GGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
genomic: GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCGgtaaactctt ... ttattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
EST: gi|110696004|gb|EE074669.1|EE074669
EST:     GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCG                         GGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
genomic: GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCGgtaaactctt ... ttattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
EST: gi|110726998|gb|EE103283.1|EE103283
EST:     GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCG                         GGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
genomic: GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCGgtaaactctt ... ttattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
EST: gi|37185852|gb|CF605205.1|CF605205
EST:     GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCG                         GGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
genomic: GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCGgtaaactctt ... ttattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
EST: gi|110369423|gb|EC933583.1|EC933583
EST:     GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCG                         GGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
genomic: GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCGgtaaactctt ... ttattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
EST: gi|83276830|gb|DV940838.1|DV940838
EST:     GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCG                         GGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
genomic: GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCGgtaaactctt ... ttattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
EST: gi|110731924|gb|EE106771.1|EE106771
EST:     GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCG                         GGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
genomic: GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCGgtaaactctt ... ttattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
EST: gi|26262666|gb|CA813729.1|CA813729
EST:     GCCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCG                         GGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
genomic: GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCGgtaaactctt ... ttattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
EST: gi|110378826|gb|EC943978.1|EC943978
EST:     GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCG                         GGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
genomic: GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCGgtaaactctt ... ttattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
EST: gi|32269782|gb|CD718941.1|CD718941
EST:     GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCG                         GGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
genomic: GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCGgtaaactctt ... ttattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
EST: gi|110717070|gb|EE092606.1|EE092606
EST:     GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCG                         GGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
genomic: GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCGgtaaactctt ... ttattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
EST: gi|87585283|gb|DY474064.1|DY474064
EST:     GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCG                         GGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
genomic: GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCGgtaaactctt ... ttattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
EST: gi|110379314|gb|EC944499.1|EC944499
EST:     GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCG                         GGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTTTCATCCTCAT
genomic: GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCGgtaaactctt ... ttattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
EST: gi|110426652|gb|EC993070.1|EC993070
EST:     GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCG                         GGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
genomic: GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCGgtaaactctt ... ttattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
EST: gi|110401615|gb|EC968230.1|EC968230
EST:     GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCG                         GGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
genomic: GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCGgtaaactctt ... ttattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
EST: gi|110372769|gb|EC936958.1|EC936958
EST:     GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCG                         GGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
genomic: GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCGgtaaactctt ... ttattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
EST: gi|110707377|gb|EE083726.1|EE083726
EST:     GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCG                         GGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
genomic: GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCGgtaaactctt ... ttattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
EST: gi|110707720|gb|EE084441.1|EE084441
EST:     GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCG                         GGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
genomic: GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCGgtaaactctt ... ttattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
EST: gi|34416015|gb|CF414769.1|CF414769
EST:     GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCG                         GGCTAATGCACAGCAGCCAAAGCTG-TTGTGGGTATGATTCTCATCCTCAT
genomic: GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCGgtaaactctt ... ttattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
EST: gi|110375593|gb|EC940596.1|EC940596
EST:     GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCG                         GGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
genomic: GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCGgtaaactctt ... ttattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
EST: gi|18458853|gb|BM437131.1|BM437131
EST:     GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCG                         GGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
genomic: GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCGgtaaactctt ... ttattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
EST: gi|110374338|gb|EC939015.1|EC939015
EST:     GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCG                         GGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT
genomic: GGCCTCTCCGCCGGTATGGCAATTGGGATTGTGGGAGATGCTGGAGTTCGgtaaactctt ... ttattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccattgatggtgttgtatatgtttaccttttttcccctgttgggattattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCATCTTTGCTGAAGCGCTTGCTCTTTATGGCCTGATTGTCGGCATCATTCTT
 cattgat  putative branch site (score: 4)
                                             ttattttc  putative PPT
               tatatgttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
acttctctcccctcccccctcatttgaaatgaaacatcaaatcctccattgatggtgttgtatatgtttaccttttttcccctgttgggattattttcagGGCTAATGCACAGCAGCCAAAGCTGTTTGTGGGTATGATTCTCATCCTCATCTTTGCTGAAGCGCTTGCTCTTTATGGCCTGATTGTCGGCATCATTCTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - -ccctccc
- - - - - - - - ccctcat
- - - - - - - - - - - - - aaatgaa
- - - - - - - - - - - - - - - - -acatcaa
- - - - - - - - - - - - - - - - - - - - -tcctcca
- - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgttg