1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tcaaggagatggtctttttaaaaaaacgacctttggatatgtttatttagatgctaagacaaagtagaaagatgagtaaaaatggtttctcttgaaacagGTTCGCCTAGGATGGCATGACGCAGGTACTTATAACAAGAACATTGAGGAGTGGCCTCTAAGAGGTGGAGCAAATGGAAGTCTGAGATTTGAAATTGAGC
species | Vitis vinifera |
transcript | Vv18s0001g02470.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGAAGACATCAAGGAGCTTCTCAAATCTAAATTTTGTCATCCTCTTTTG GTTCGCCTAGGATGGCATGATGCAGGTACTTATAACAAGAACATTGAGGAGEST: gi|30125959|gb|CB911298.1|CB911298
genomic: GAGAAGACATCAAGGAGCTTCTCAAATCTAAATTTTGTCATCCTCTTTTGgtaatgcgct ... cttgaaacagGTTCGCCTAGGATGGCATGACGCAGGTACTTATAACAAGAACATTGAGGAG
EST: GAGAAGACATCAAGGAGCTTCTCAAATCTAAATTTTGTCATCCTCTTTTG GTTCGCCTAGGATGGCATGATGCAGGTACTTATAACAAGAACATTGAGGAGEST: gi|110702692|gb|EE078884.1|EE078884
genomic: GAGAAGACATCAAGGAGCTTCTCAAATCTAAATTTTGTCATCCTCTTTTGgtaatgcgct ... cttgaaacagGTTCGCCTAGGATGGCATGACGCAGGTACTTATAACAAGAACATTGAGGAG
EST: GAGAAGACATCAAGGAGCTTCTCAAATCTAAATTTTGTCATCCTCTTTTG GTTCGCCTAGGATGGCATGATGCAGGTACTTATAACAAGAACATTGAGGAG
genomic: GAGAAGACATCAAGGAGCTTCTCAAATCTAAATTTTGTCATCCTCTTTTGgtaatgcgct ... cttgaaacagGTTCGCCTAGGATGGCATGACGCAGGTACTTATAACAAGAACATTGAGGAG
tttagatgctaagacaaagtagaaagatgagtaaaaatggtttctcttgaaacagGTTCGCCTAGGATGGCATGACGCAGGTACTTATAACAAGAACATTGAGGAGTGGCCTCTAAGAGGTGGAGCAAATGGAAGTCTGAGATTTGAAATTGAGC
tttctctt CT-rich tract
agtaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaaggagatggtctttttaaaaaaacgacctttggatatgtttatttagatgctaagacaaagtagaaagatgagtaaaaatggtttctcttgaaacagGTTCGCCTAGGATGGCATGACGCAGGTACTTATAACAAGAACATTGAGGAGTGGCCTCTAAGAGGTGGAGCAAATGGAAGTCTGAGATTTGAAATTGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- aaggaga
- - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aagacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtaaaaa