Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaatcatcgattgctctatcgccttgccttcatttttttgttttgttttatttctggattttttaaaaaatttaaattttgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAGGGATATGAAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTAT

Basic information

species Vitis vinifera
transcript Vv18s0001g02260.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g02260.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os06g43570.1 (Oryza sativa), 3'ss of exon 3
gtatgaatcatcga--ttgctctatcgccttgccttcatttttttgttttgttttatttctggattttttaaaaaatttaaattttgat---------gtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAGGGATATGAAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTAT
   ||| ||  ||     | | | || |||   |||  |  ||||  || ||||    || ||   |||   | ||||    ||| | |         ||| || || || || || || ||  ||||||| |||||||| || || ||||||||||| ||||||||| | ||||| || ||||| || || ||||| || || 
--gtgagtcgccgcgccagatttgtcccctcctctttgtgctttt--ttggtttagcatccgg---tttgggagaattagggtttcggtcggtcggtggtgcagGTACCAGCGCCTGGTGTTCAGGCACAAGCTGTATCAACTGCGGGAGGAGAGGGACATGAAGCCCCAGACCTTCGCCAGCCTCGTCTCCGCTCTCCTCTAC

upper sequence: Vv18s0001g02260.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G092975_T01 (Zea mays), 3'ss of exon 2
gtatgaatcatcgattgctctat-cgccttgccttcatttttttgtt-ttgttttatttctggattttttaaaaaatttaaattttgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAGGGATATGAAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTAT
   ||| ||  |  ||||   || | ||   |||  |       | | |||  ||  ||  ||    ||  |  | |||   |     | || || || || ||| | || ||  ||||||| ||||||||||| || ||||||||||| ||||||||||| |||||||| |||||||| ||||| || || || 
--gtgagtcg-cagttgccgaattctcccctcctctacacacgggctgttgccttcgtttcggcagctt--aggattttgggtccc--tctgcagGTACCAGCGGTTGGTGTTCAGGCACAAGCTGTATCAGCTGCGGGAGGAGAGGGACATGAAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTAC

upper sequence: Vv18s0001g02260.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G045371_T02 (Zea mays), 3'ss of exon 2
gtatgaatcatcgattgctctatcgccttgccttcatttttttgttttgttttatttc-tggattttttaaaaaatttaaattttgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAGGGATATGAAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTAT
   ||| ||  |  ||||   ||   |   |   |        |   |||| | ||   |  |  |  | |    ||||  |     |  | || || || ||| | || ||  ||||||| ||||||||||| || ||||||||||| |||||||| || |||||||| |||||||| ||||| || || || 
--gtgagtcg-cagttgccgaattctccc-cgcccgcccccacggcctgttctcttcggttcagctgcttagggttttaggtccc--tccgcagGTACCAGCGGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAGGGACATGAAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTAC

upper sequence: Vv18s0001g02260.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G117544_T01 (Zea mays), 3'ss of exon 2
-------gtatgaatcatcgattgctctatcgccttgccttcatttt------------tttgttttgttttatttctggattttttaaaaaatttaaattttgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAGGGATATGAAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTAT
           | ||| ||||||  | |     |    || | ||||              |   | ||||    | ||| |||  |  |     |     |   |||| || ||||| ||||| || ||  |||||||  |||| |||||    ||||||||||| |||||||||||||||||||| |||||||| || || || || |||
gtgggtgtcccggatcctcgattcgtttggtttcggcgctccgttttggagacggggaccgtacatggtttatgatttgggtttgatgcatgtcgttgtcctctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAGGGACATGAAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTAT

upper sequence: Vv18s0001g02260.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA13G10130.1 (Glycine max), 3'ss of exon 1
gtatgaatcatcgattgctctatcgccttgccttcatttttttgttttgttttatttctggattttttaaaaaatttaaattttgatgtgt-----------------agATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAGGGATATGAAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTAT
||||| | |        || ||     || | ||  ||||||| ||||  ||| | |     ||||| ||    |||   | |   | |||                 || ||||| || |||||||| ||||||||||||||||||||||| || |||||||||||||| || || |||||||| ||| | || |||||||| ||||||
gtatgtagcgctacc--ctttactctttttcttttgtttttttctttttctttttctaccattttttaaattgtttttgttctctctttgtttacttttttttttttaagGTATCAGCGTCTTGTTTTCCGGCACAAACTGTATCAGCTTCGTGAAGAGAGGGATATGAAACCAGAGACCTTTGCCAGCTTAGTCTCTGCTCTGCTTTAT

upper sequence: Vv18s0001g02260.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA14G24270.2 (Glycine max), 3'ss of exon 1
gtatgaatcatcgat-tgctctatcgccttgccttcatttttttgttttg----ttttatttctggattttttaaaaaatttaaattttgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAGGGATATGAAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTAT
||||| |  |      |  |||||   |||   ||| ||| ||| ||       |||| ||  | | ||||||       ||   ||    | |  || ||||| || |||||||| |||||||||||||| ||||| || || |||||||||||||| || || |||||||| ||  | || |||||||| || |||
gtatgtagtactacccttttctattttcttcttttcttttcttttttccccaattttttttaattgtttttttgtttttctttgtttacttttttaagGTATCAGCGTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAGGGATATGAAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351025252|gb|FQ434265.1|FQ434265
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|351043059|gb|FQ443901.1|FQ443901
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|110358622|gb|EC922965.1|EC922965
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|351036035|gb|FQ463880.1|FQ463880
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|351042763|gb|FQ431241.1|FQ431241
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|33406690|gb|CF212317.1|CF212317
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTAACAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|351046593|gb|FQ453209.1|FQ453209
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|33406790|gb|CF212417.1|CF212417
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTAACAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|110399653|gb|EC966170.1|EC966170
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|351015363|gb|FQ446242.1|FQ446242
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|349832596|gb|FQ421954.1|FQ421954
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|351045652|gb|FQ440837.1|FQ440837
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|349813662|gb|FQ413896.1|FQ413896
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|71889280|gb|DT038335.1|DT038335
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|71882433|gb|DT031488.1|DT031488
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|351048930|gb|FQ449773.1|FQ449773
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGCATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|110402513|gb|EC960313.1|EC960313
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|26257297|gb|CA808360.1|CA808360
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|351054655|gb|FQ456852.1|FQ456852
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|351025704|gb|FQ426718.1|FQ426718
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|22011604|gb|BQ796638.1|BQ796638
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|351018791|gb|FQ425693.1|FQ425693
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|349809085|gb|FQ398085.1|FQ398085
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|349815197|gb|FQ400352.1|FQ400352
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCATACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|349829265|gb|FQ419797.1|FQ419797
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGCATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|349829602|gb|FQ421120.1|FQ421120
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|351037207|gb|FQ457040.1|FQ457040
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|110689722|gb|EE066205.1|EE066205
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|349829652|gb|FQ421170.1|FQ421170
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|349808570|gb|FQ405714.1|FQ405714
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|110717244|gb|EE092941.1|EE092941
EST:     GACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|30125493|gb|CB910832.1|CB910832
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|110394987|gb|EC960457.1|EC960457
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|71890265|gb|DT039320.1|DT039320
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|110387657|gb|EC952341.1|EC952341
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|351045223|gb|FQ451671.1|FQ451671
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|349832955|gb|FQ423077.1|FQ423077
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGCATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|351018701|gb|FQ425603.1|FQ425603
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|110423662|gb|EC990010.1|EC990010
EST:     TCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: TCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|110372541|gb|EC936718.1|EC936718
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|110362397|gb|EC925927.1|EC925927
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|349813934|gb|FQ414168.1|FQ414168
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|77578611|gb|DV218095.1|DV218095
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|110423854|gb|EC990205.1|EC990205
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|351029247|gb|FQ435447.1|FQ435447
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|110391604|gb|EC956591.1|EC956591
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|110715271|gb|EE093128.1|EE093128
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|71859023|gb|DT008078.1|DT008078
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|351031280|gb|FQ445305.1|FQ445305
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|294966117|gb|GW837484.1|GW837484
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|110381521|gb|EC934688.1|EC934688
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|161706889|gb|FC056789.1|FC056789
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|349822039|gb|FQ408368.1|FQ408368
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
EST: gi|161720329|gb|FC071182.1|FC071182
EST:     GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCT                         ATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG
genomic: GATCGGGTTTTTCTCGGTCTGTCCGGACTGGCTACCGATGCTCAGACTCTgtatgaatca ... tgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttgttttgttttatttctggattttttaaaaaatttaaattttgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAGGGATATGAAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTAT
                                          ttttgat  putative branch site (score: 4)
      ttttgttttatttctg  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgaatcatcgattgctctatcgccttgccttcatttttttgttttgttttatttctggattttttaaaaaatttaaattttgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAGGGATATGAAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC