1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...attatagcaaacttatagtgaaaccttttttaattttcaaattgttggtttgagtttcaagctattaattcatactattttctttctgtcaaacttatagTACATTCGCTGTGCAAAGAGTGATTATGGATGCTACGATGTCACAGAACCACCCATTGATGCGCCTCGGGATCCATTGTACAAGTCCGAGAGGGAGGTTT
species | Vitis vinifera |
transcript | Vv18s0001g01770.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACACTGATGTGTACGCCATTCCAAGGGTTCTTGCGCCAATGCCGCAGAAG TACATTCGCTGTGCAAAGAGTGATTATGGATGCTACGATGTCACAGAACCAEST: gi|349824926|gb|FQ406465.1|FQ406465
genomic: ACACTGATGTGTACGCCATTCCAAGGGTTCTTGCGCCAATGCCGCAGAAGgtatgatttc ... aaacttatagTACATTCGCTGTGCAAAGAGTGATTATGGATGCTACGATGTCACAGAACCA
EST: ACACTGATGTGTACGCCATTCCAAGGGTTCTTGCGCCAATGCCGCAGAAG TACATTCGCTGTGCAAAGAGTGATTATGGATGCTACGATGTCACAGAACCA
genomic: ACACTGATGTGTACGCCATTCCAAGGGTTCTTGCGCCAATGCCGCAGAAGgtatgatttc ... aaacttatagTACATTCGCTGTGCAAAGAGTGATTATGGATGCTACGATGTCACAGAACCA
tggtttgagtttcaagctattaattcatactattttctttctgtcaaacttatagTACATTCGCTGTGCAAAGAGTGATTATGGATGCTACGATGTCACAGAACCACCCATTGATGCGCCTCGGGATCCATTGTACAAGTCCGAGAGGGAGGTTT
tattaat putative branch site (score: 2)
ttttctttctgtca putative PPT
tattaattcatactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attatagcaaacttatagtgaaaccttttttaattttcaaattgttggtttgagtttcaagctattaattcatactattttctttctgtcaaacttatagTACATTCGCTGTGCAAAGAGTGATTATGGATGCTACGATGTCACAGAACCACCCATTGATGCGCCTCGGGATCCATTGTACAAGTCCGAGAGGGAGGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - -agcaaac
- - - - - - - - - tgaaacc
- - - - - - - - - - - - - - - - - - - - - tgttggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tcaagct