1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttatatttgttgagatatttatcacgttcattccacttacacgaattatatacatctctaagtgatgatatattgacttccatgtacttttttggacagTCCAAGGAAGAATGTGAGTACATGATAAGTCTTGCCAAACCTTATATGAAAAAGTCAACTGTTGTTGATAGTGAAACTGGTCGGAGCAAAGATAGCAG
species | Vitis vinifera |
transcript | Vv18s0001g00950.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGGAAATCGTCTCCTGGGAGCCCAGAGCTTTCATTTATCACAATTTCTTG TCCAAGGAAGAATGTGAGTACATGATAAGTCTTGCCAAACCTTATATGAAAEST: gi|110375223|gb|EC940187.1|EC940187
genomic: CGGAAATTGTCTCCTGGGAGCCCAGAGCTTTCATTTATCACAATTTCTTGgtgactgctt ... ttttggacagTCCAAGGAAGAATGTGAGTACATGATAAGTCTTGCCAAACCTTATATGAAA
EST: CGGAAATCGTCTCCTGGGAGCCCAGAGCTTTCATTTATCACAATTTCTTG TCCAAGGAAGAATGCGAGTACATGATAAGTCTTGCCAAACCTTATATGAAAEST: gi|161714742|gb|FC062685.1|FC062685
genomic: CGGAAATTGTCTCCTGGGAGCCCAGAGCTTTCATTTATCACAATTTCTTGgtgactgctt ... ttttggacagTCCAAGGAAGAATGTGAGTACATGATAAGTCTTGCCAAACCTTATATGAAA
EST: GGAAATCT-TCTCCTGGGAGCCCAGAGCTTTCATTTATCACAATTTCTTG TCCAAGGAAGAATGCGAGTACATGATAAGTCTTGCCAAACCTTATATGAAA
genomic: GGAAAT-TGTCTCCTGGGAGCCCAGAGCTTTCATTTATCACAATTTCTTGgtgactgctt ... ttttggacagTCCAAGGAAGAATGTGAGTACATGATAAGTCTTGCCAAACCTTATATGAAA
attatatacatctctaagtgatgatatattgacttccatgtacttttttggacagTCCAAGGAAGAATGTGAGTACATGATAAGTCTTGCCAAACCTTATATGAAAAAGTCAACTGTTGTTGATAGTGAAACTGGTCGGAGCAAAGATAGCAG
tattgac putative branch site (score: 2)
tactttttt putative PPT
atgatatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttatatttgttgagatatttatcacgttcattccacttacacgaattatatacatctctaagtgatgatatattgacttccatgtacttttttggacagTCCAAGGAAGAATGTGAGTACATGATAAGTCTTGCCAAACCTTATATGAAAAAGTCAACTGTTGTTGATAGTGAAACTGGTCGGAGCAAAGATAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - tcattcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatgta