1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagttcctgttaacgaaatcctgttcaatttttatttttatagtaatttagggtttattttttaggcttattttttttggaaattttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACGACGGACTCTGGTATGGAAGGTCCTTCGGTTCCGGCGGCGGCGGAGGCCC
species | Vitis vinifera |
transcript | Vv18s0001g00750.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACGEST: gi|351030673|gb|FQ438511.1|FQ438511
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACGEST: gi|30326615|gb|CD009877.1|CD009877
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACGEST: gi|32248331|gb|CD714150.1|CD714150
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACGEST: gi|110367582|gb|EC931522.1|EC931522
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACGEST: gi|30325841|gb|CD009103.1|CD009103
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACGEST: gi|110426950|gb|EC993379.1|EC993379
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACGEST: gi|110397725|gb|EC963577.1|EC963577
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACGEST: gi|30327911|gb|CD011173.1|CD011173
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACGEST: gi|110411458|gb|EC977172.1|EC977172
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACGEST: gi|32267575|gb|CD716538.1|CD716538
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACGEST: gi|30325217|gb|CD008479.1|CD008479
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACGEST: gi|110721872|gb|EE097605.1|EE097605
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACGEST: gi|30322568|gb|CD005830.1|CD005830
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACGEST: gi|30127790|gb|CB913129.1|CB913129
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACGEST: gi|32248255|gb|CD714074.1|CD714074
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACGEST: gi|110383972|gb|EC948381.1|EC948381
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACGEST: gi|32249309|gb|CD715128.1|CD715128
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACGEST: gi|18459473|gb|BM437751.1|BM437751
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACGEST: gi|351023996|gb|FQ423419.1|FQ423419
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACGEST: gi|32272050|gb|CD721209.1|CD721209
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACGEST: gi|37186187|gb|CF605540.1|CF605540
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACGEST: gi|351041477|gb|FQ431503.1|FQ431503
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG GATGCGGCGATGGGGTTGGTTCTGAGCGCGGCGTCGGTGAGAGGTTGGACGEST: gi|110695208|gb|EE072961.1|EE072961
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACGEST: gi|30325131|gb|CD008393.1|CD008393
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACGEST: gi|110381520|gb|EC934681.1|EC934681
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACGEST: gi|27579911|gb|CB002606.1|CB002606
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
ttatagtaatttagggtttattttttaggcttattttttttggaaattttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACGACGGACTCTGGTATGGAAGGTCCTTCGGTTCCGGCGGCGGCGGAGGCCC
ttttctt CT-rich tract
tttattttttaggctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttcctgttaacgaaatcctgttcaatttttatttttatagtaatttagggtttattttttaggcttattttttttggaaattttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACGACGGACTCTGGTATGGAAGGTCCTTCGGTTCCGGCGGCGGCGGAGGCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG