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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttcataaattagagtatttgccctgtattagtggaaggatttggatcgggattagcttaatcgaggtgttaattgattaaaaaaacccctggtctgcagGTGTACAGACGATGAAATGGAGACGTATGGAATTCATCTGCTGGCTCTGTCGCATGTGTTTTTGGTCCCACAGCTGAAGCAGAGATGCACCAAAGGATTG

Basic information

species Vitis vinifera
transcript Vv17s0000g09790.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161717443|gb|FC067556.1|FC067556
EST:     GTTCCCTGCGACGCCGTTTTGGCGTTCGTTCGGTTCCTCTATTCGTCGAG                         GTGTACAGACGATGAAATGGAGACGTATGGAATTCATCTGTTGGCTCTGTC
genomic: GTTCCCTGCGACGCCGTTTTGGCGTTCGTTCGGTTCCTCTATTCGTCGTGgtcagttgcc ... tggtctgcagGTGTACAGACGATGAAATGGAGACGTATGGAATTCATCTGCTGGCTCTGTC
EST: gi|34548181|gb|CF516413.1|CF516413
EST:     GTTCCCTGCGACGCCGTTTTGGCGTTCGTTCGGTTCCTCTATTCGTCGAG                         GTGTACAGACGATGAAATGGAGACGTATGGAATTCATCTGTTGGCTCTGTC
genomic: GTTCCCTGCGACGCCGTTTTGGCGTTCGTTCGGTTCCTCTATTCGTCGTGgtcagttgcc ... tggtctgcagGTGTACAGACGATGAAATGGAGACGTATGGAATTCATCTGCTGGCTCTGTC
EST: gi|161715129|gb|FC063975.1|FC063975
EST:     GTTCCCTGCGACGCCGTTTTGGCGTTCGTTCGGTTCCTCTATTCGTCGAG                         GTGTACAGACGATGAAATGGAGACGTATGGAATTCATCTGCTGGCTCTGTC
genomic: GTTCCCTGCGACGCCGTTTTGGCGTTCGTTCGGTTCCTCTATTCGTCGTGgtcagttgcc ... tggtctgcagGTGTACAGACGATGAAATGGAGACGTATGGAATTCATCTGCTGGCTCTGTC
EST: gi|34550534|gb|CF518752.1|CF518752
EST:     GTTCCCTGCGACGCCGTTTTGGCGTTCGTTCGGTTCCTCTATTCGTCGAG                         GTGTACAGACGATGAAATGGAGACGTATGGAATTCATCTGCTGGCTCTGTC
genomic: GTTCCCTGCGACGCCGTTTTGGCGTTCGTTCGGTTCCTCTATTCGTCGTGgtcagttgcc ... tggtctgcagGTGTACAGACGATGAAATGGAGACGTATGGAATTCATCTGCTGGCTCTGTC
EST: gi|71863328|gb|DT012383.1|DT012383
EST:     GTTCCCTGCGACGCCGTTTTGGCGTTCGCTCGGTTCCTCTATTCGTCGTG                         GTGTACAGACGATGAAATGGAGACGTATGGAATTCATCTGCTGGCTCTGTC
genomic: GTTCCCTGCGACGCCGTTTTGGCGTTCGTTCGGTTCCTCTATTCGTCGTGgtcagttgcc ... tggtctgcagGTGTACAGACGATGAAATGGAGACGTATGGAATTCATCTGCTGGCTCTGTC
EST: gi|77581731|gb|DV219814.1|DV219814
EST:     GTTCCCTGCGACGCCGTTTTGGCGTTCGTTCGGTTCCTCTATTCGTCGAG                         GTGTACAGACGATGAAATGGAGACGTATGGAATTCATCTGTTGGCTCTGTC
genomic: GTTCCCTGCGACGCCGTTTTGGCGTTCGTTCGGTTCCTCTATTCGTCGTGgtcagttgcc ... tggtctgcagGTGTACAGACGATGAAATGGAGACGTATGGAATTCATCTGCTGGCTCTGTC
EST: gi|30137579|gb|CB922917.1|CB922917
EST:     GTTCCCTGCGACGCCGTTTTGGCGTTCGTTCGGTTCCTCTATTCGTCGAG                         GTGTACAGACGATGAAATGGAGACGTATGGAATTCATCTGTTGGCTCTGTC
genomic: GTTCCCTGCGACGCCGTTTTGGCGTTCGTTCGGTTCCTCTATTCGTCGTGgtcagttgcc ... tggtctgcagGTGTACAGACGATGAAATGGAGACGTATGGAATTCATCTGCTGGCTCTGTC
EST: gi|161718052|gb|FC067587.1|FC067587
EST:     GTTCCCTGCGACGCCGTTTTGGCGTTCGTTCGGTTCCTCTATTCGTCGAG                         GTGTACAGACGATGAAATGGAGACGTATGGAATTCATCTGCTGGCTCTGTC
genomic: GTTCCCTGCGACGCCGTTTTGGCGTTCGTTCGGTTCCTCTATTCGTCGTGgtcagttgcc ... tggtctgcagGTGTACAGACGATGAAATGGAGACGTATGGAATTCATCTGCTGGCTCTGTC
EST: gi|161714279|gb|FC064170.1|FC064170
EST:     GTTCCCTGCGACGCCGTTTTGGCGTTCGTTCGGTTCCTCTATTCGTCGAG                         GTGTACAGACGATGAAATGGAGACGTATGGAATTCATCTGCTGGCTCTGTC
genomic: GTTCCCTGCGACGCCGTTTTGGCGTTCGTTCGGTTCCTCTATTCGTCGTGgtcagttgcc ... tggtctgcagGTGTACAGACGATGAAATGGAGACGTATGGAATTCATCTGCTGGCTCTGTC
EST: gi|110700643|gb|EE077475.1|EE077475
EST:     GTTCCCTGCGACGCCGTTTTGGCGTTCGTTCGGTTCCTCTATTCGTCGAG                         GTGTACAGACGATGAAATGGAGACGTATGGAATTCATCTGTTGGCTCTGTC
genomic: GTTCCCTGCGACGCCGTTTTGGCGTTCGTTCGGTTCCTCTATTCGTCGTGgtcagttgcc ... tggtctgcagGTGTACAGACGATGAAATGGAGACGTATGGAATTCATCTGCTGGCTCTGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcgggattagcttaatcgaggtgttaattgattaaaaaaacccctggtctgcagGTGTACAGACGATGAAATGGAGACGTATGGAATTCATCTGCTGGCTCTGTCGCATGTGTTTTTGGTCCCACAGCTGAAGCAGAGATGCACCAAAGGATTG
                                         cccct  CT-rich tract
                      tgttaattgattaaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tttcataaattagagtatttgccctgtattagtggaaggatttggatcgggattagcttaatcgaggtgttaattgattaaaaaaacccctggtctgcagGTGTACAGACGATGAAATGGAGACGTATGGAATTCATCTGCTGGCTCTGTCGCATGTGTTTTTGGTCCCACAGCTGAAGCAGAGATGCACCAAAGGATTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG
- - - - - - - - - -tgccctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa