Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcaaaatctctctatgcttccattatgcatacatgcatttatgagctcaaaaaagttaatgattttatgaattgttcatgatttctgtatcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCACAGCCAGAACGCCCCCCTCGCGTGTTTGAACCTGCTTTTAGAATGTATG

Basic information

species Vitis vinifera
transcript Vv17s0000g09680.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g09680.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA17G13470.1 (Glycine max), 3'ss of exon 2
ttcaaaatctctctatgcttccattatgcatacatgc-atttatgagctcaaaaaagttaat---gattttatgaattgttcatgatttc-----tgtatcttg-aacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCACAGCCAGAACGCCCCCCTCGCGTGTTTGAACCTGCTTTTAGAATGTATG---
          | || | ||   |||| |||| |||   | || |   ||| ||    || ||   | |||  ||| || ||   ||| |      ||| |  ||  ||||||| || |||||||  | |||||||| || ||||||||||||  |||| ||||||| |||||||| || |||       || |    |||||| | ||||   
---------gccctttactgg-attaagcatgcatattaattttcttctctaattgctttattgtggtttcttgagtttttttggatcttatccatgttttctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCACAGCCTGAACGCCCACCGCGCCCACCACAATCC---TTTAGAGTCTATGTTG

upper sequence: Vv17s0000g09680.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA05G02800.1 (Glycine max), 3'ss of exon 2
--ttcaaaatctctctatgcttccattatgcatacatgcatttatgagctcaaaaaagttaatgattttatgaatt-gttcatgatttctgtatcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCACAGCCAGAACGCCCCCCTCGCGTGTT-TGAACCTGCTTTTAGAATGTATG
  |     |  | ||  |   |  | ||  ||| |||  ||| ||   ||     || ||  |  | || ||  || | || |        | |||   ||||||| || |||||||  | |||||||| || ||||||||||||  |||| ||||||| |||||||| || |||       |  |||    ||    | ||  
tatgtgtgacatgtccgttactggaataaccattcat--attaattttcttctctaa-ttgcttttattgtggtttcgatcttatccatcttttctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCACAGCCTGAACGCCCACCACGCCCACCACGTTCCTTTAGTTCTGGTTTAA-

upper sequence: Vv17s0000g09680.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT4G24770.1 (Arabidopsis thaliana), 3'ss of exon 2
-----ttcaaaatctctctatgcttccattatgcatacatgcatttatgagctcaaaaaagttaatgattttatgaattgttcatgatttctgtatcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCACAGCCAGAACGCCCCCCTCGCGTGTTTGAACCTGCTTTTAGAATGTATG
     ||   ||      |  | |     |   |  ||||    || ||      | ||  ||  ||| | | ||  ||| | ||  |   ||| | |    |||||  |  | ||| | ||  | |||||||||||||| |||||| |||||||||  ||||||||  | ||||| || | ||||||||| || ||| | ||||
tgtttttgggaaatgagttgagttggggattctctaacatttgattctgtctgtgagaacattgctgaatatctgtgttggt-attttcattgtgttt----cagGATCTTAACGGACGTCTACTAACTGTAAACAAGGCAGCTCCAAGAGGATCACGTCCAGAACGTGCGCCTCGGGTATATGAACCTGCATTCAGAGTATATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351054213|gb|FQ450295.1|FQ450295
EST:     TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|351054809|gb|FQ462839.1|FQ462839
EST:     TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|351045782|gb|FQ440967.1|FQ440967
EST:     TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAAGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|351055043|gb|FQ440382.1|FQ440382
EST:     TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|351057237|gb|FQ450944.1|FQ450944
EST:     TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|351036322|gb|FQ458697.1|FQ458697
EST:     CGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTAT                         GAAATAGATGGAAGGCTCCTGACTG
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTG
EST: gi|349820513|gb|FQ404008.1|FQ404008
EST:     TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|351033858|gb|FQ447896.1|FQ447896
EST:     TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|352798839|gb|FQ478474.1|FQ478474
EST:     TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|351054296|gb|FQ450378.1|FQ450378
EST:     TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTAT                         GAAATAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGAT
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGAT
EST: gi|352795680|gb|FQ480268.1|FQ480268
EST:     TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGA
EST: gi|351053474|gb|FQ459221.1|FQ459221
EST:     TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|349819891|gb|FQ404613.1|FQ404613
EST:     TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|351057301|gb|FQ453983.1|FQ453983
EST:     TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|349823662|gb|FQ415072.1|FQ415072
EST:     TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|349822741|gb|FQ398128.1|FQ398128
EST:     TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCCTGACTGTAAACAAGGCTGCTCCACGAGGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|349823242|gb|FQ400221.1|FQ400221
EST:     TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|351037105|gb|FQ456938.1|FQ456938
EST:     TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCAC
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCAC
EST: gi|351048091|gb|FQ441263.1|FQ441263
EST:     TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|351052228|gb|FQ452382.1|FQ452382
EST:     TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|349828684|gb|FQ418419.1|FQ418419
EST:     TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|351048048|gb|FQ441220.1|FQ441220
EST:     TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|37188675|gb|CF608024.1|CF608024
EST:     TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|351044143|gb|FQ452816.1|FQ452816
EST:     TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|351053520|gb|FQ459267.1|FQ459267
EST:     TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|351039421|gb|FQ461288.1|FQ461288
EST:     TGAGTACTGCTGAAGAACCCCAAAAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|351041648|gb|FQ455858.1|FQ455858
EST:     CAAGTACTGTTGAAGAAGCCGAANAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|110380242|gb|EC945490.1|EC945490
EST:     TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|351047375|gb|FQ451887.1|FQ451887
EST:     TGAGTACTGTTGAAGAAGCCGAANAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTTCACGAGGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|351045542|gb|FQ440727.1|FQ440727
EST:     TGAGTACTGTTGAAGAAGCCGAANAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|351017609|gb|FQ435962.1|FQ435962
EST:     TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|351044574|gb|FQ443105.1|FQ443105
EST:     TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAAGCTGCTCCACGAGGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|351056003|gb|FQ453464.1|FQ453464
EST:     TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|349807897|gb|FQ402288.1|FQ402288
EST:     TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|351039011|gb|FQ457686.1|FQ457686
EST:     TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|351046072|gb|FQ441455.1|FQ441455
EST:     TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|351052006|gb|FQ450697.1|FQ450697
EST:     TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|351033487|gb|FQ462138.1|FQ462138
EST:     TGAGTACTGTTGAAGAAGCCGAANAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAAGCTGCTCCATGAGGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|351035016|gb|FQ458373.1|FQ458373
EST:     CGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAAATGGAAGGCTCTTGACTG
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTG
EST: gi|352786081|gb|FQ481876.1|FQ481876
EST:     TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAAGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|351033638|gb|FQ462168.1|FQ462168
EST:     TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|349809071|gb|FQ407520.1|FQ407520
EST:     TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|351054970|gb|FQ440309.1|FQ440309
EST:     TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|351038881|gb|FQ457556.1|FQ457556
EST:     CGAGTACTGTTGAAGAAGCCGAANAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|351042300|gb|FQ442767.1|FQ442767
EST:     CGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|351055671|gb|FQ452136.1|FQ452136
EST:     TGAGTACTGTTGAAGAAGCCGAANAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|351041695|gb|FQ455905.1|FQ455905
EST:     TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA
EST: gi|110690700|gb|EE068090.1|EE068090
EST:     TGAGTACTGTTGAAGAAGCCGAANAGGCTGTGGATATGTTTCATCGTTAT                         GAATTAGATGGAANGCTCTTGACTGTAAACAAAGCTGCTCCACGAAGATCA
genomic: TGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATgtgagttcac ... tcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctcaaaaaagttaatgattttatgaattgttcatgatttctgtatcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCACAGCCAGAACGCCCCCCTCGCGTGTTTGAACCTGCTTTTAGAATGTATG
         agttaat  putative branch site (score: 4)
     aaaaagttaatgattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttcaaaatctctctatgcttccattatgcatacatgcatttatgagctcaaaaaagttaatgattttatgaattgttcatgatttctgtatcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCACAGCCAGAACGCCCCCCTCGCGTGTTTGAACCTGCTTTTAGAATGTATG

- caaaatc
- - - - - - - - gcttcca
- - - - - - - - - - - - tatgcat
- - - - - - - - - - - - - - - -acatgca
- - - - - - - - - - - - - - - - - - - - - - - - -aaaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttcatg