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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacttgatcttccttcgtaccctttgtttctgattatattttctttgagtcagttgattcaatgtggtattttttcggtgttgtgttgcagAATCACAACTGGGAACTTTTGCCGCAATCCCTATAACGTAACTGGGATTTGCAATCGCAGTTCCTGCCCTCTGGCCAATAGTCGCTACGCCACAATTCGA

Basic information

species Vitis vinifera
transcript Vv17s0000g09220.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g09220.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EFJ11026 (Selaginella moellendorffii), 3'ss of exon 1
gtaaacttgatcttccttcgtaccctttgtttctgattatattttctttgagtcagttgattcaatgtggtattttttcggtgttgtgttgcagAATCACAACTGGGAACTTTTGCCGCAATCCCTATAACGTAACTGGGATTTGCAATCGCAGTTCCTGCCCTCTGGCCAATAGTCGCTACGCCACAATTCGA
                            ||    || |  |||  |   |    |  |   ||    | |   |   ||||   |     |||| | |   ||   ||  || ||||| ||||  || || || || ||| ||||||||||||| ||||| ||||| ||||| ||||| || ||||||||| | 
----------------------------gtaagcgaatcgattgccgccggtggatctctctctcaattgcgatcgatcggaaat-----gcagGACCCAGACGCAGAGTTTCTGCCGGAATCAATACAATGTCACGGGGCTTTGCAATCGCAGCTCCTGTCCTCTTGCCAACAGTCGATATGCCACAATTAGG

upper sequence: Vv17s0000g09220.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EFJ07625 (Selaginella moellendorffii), 3'ss of exon 1
gtaaacttgatcttccttcgtaccctttgtttctgattatattttctttgagtcagttgattcaatgtggtattttttcggtgttgtgttgcagAATCACAACTGGGAACTTTTGCCGCAATCCCTATAACGTAACTGGGATTTGCAATCGCAGTTCCTGCCCTCTGGCCAATAGTCGCTACGCCACAATTCGA
                            ||    || |  |||  |  ||    |  |   ||    | |   |   ||||   |     |||| | |   ||   ||  || || || ||||  || || || || ||| ||||||||||||| ||||| ||||| ||||| ||||| || ||||||||  | 
----------------------------gtaagcgactcgattgccgctggtggatctctctctcaattgcgatcgatcggaaat-----gcagGACCCAGACGCAGAGTTTCTGTCGGAATCAATACAATGTCACGGGGCTTTGCAATCGCAGCTCCTGTCCTCTTGCCAACAGTCGATATGCCACAATCAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattttctttgagtcagttgattcaatgtggtattttttcggtgttgtgttgcagAATCACAACTGGGAACTTTTGCCGCAATCCCTATAACGTAACTGGGATTTGCAATCGCAGTTCCTGCCCTCTGGCCAATAGTCGCTACGCCACAATTCGA
               agttgat  putative branch site (score: 5)
                               tatttttt  TA-rich tract