Sequence
atgc intronic sequence ATGC exonic sequencegtatttcatcgttaaatggtgtcgcgctgtgaatctcaattttgtacgtgtaacttttagctgattgagcttgttcacttgacagGGTATTGCCTTGAGGTGATTGCTAAATTGGGTTTTGTTGAGCCAACGCCTATTCAGGCTCAAGGATGGCCAATGGCCTTAAAGGGTAGAGATTTAATTGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g09130.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA05G02590.1 (Glycine max), 3'ss of exon 2
gtatttcatcgttaaatggtgtcgcgctgtgaatctcaattttgtacgt---------gtaacttttagctgattga-------gcttgttcacttgacagGGTATTGCCTTGAGGTGATTGCTAAATTGGGTTTTGTTGAGCCAACGCCTATTCAGGCTCAAGGATGGCCAATGGCCTTAAAGGGTAGAGATTTAATTGG
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gtattttacttgtttatgctcttgcattgctcattttgcttgttgatgtcacttctttgattcctttatctgattggatgttatgttgtttttcgtgtcagATTACTGCCTTGAGGTTATTGCCAATCTGGGTTTTGCGGAGCCCACCCCAATTCAGGCTCAGGGTTGGCCCATGGCTCTTAAGGGTAGAGACTTAATTGG
upper sequence: Vv17s0000g09130.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA17G09270.1 (Glycine max), 3'ss of exon 2
-------------gtatttcatcgttaaatggtgtcgcgct-gtgaatctcaattttgtacgtgtaacttttagctgattgagcttgttcacttgacagGGTATTGCCTTGAGGTGATTGCTAAATTGGGTTTTGTTGAGCCAACGCCTATTCAGGCTCAAGGATGGCCAATGGCCTTAAAGGGTAGAGATTTAATTGG
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gtattttacttgtttatgctcttgtattgccctttggtgcttgttgatttcactttgattcctttatctgattgaatgttatgttgtttttcgtgtcagATTACTGCCTTGAGGTTATTGCCAATCTGCGTTTTGCTGATCCCACTCCAATTCAAGCTCAGGGTTGGCCCATGGCTCTGAAGGGTAGAGATTTAATTGG
upper sequence: Vv17s0000g09130.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT5G63120.1 (Arabidopsis thaliana), 3'ss of exon 2
gtatttcatcgttaaatggtgtcgcgctgtgaatctcaattttgt--acgtgtaacttttagctgattgagcttgttcacttgacagGGTATTGCCTTGAGGTGATTGCTAAATTGGGTTTTGTTGAGCCAACGCCTATTCAGGCTCAAGGATGGCCAATGGCCTTAAAGGGTAGAGATTTAATTGG
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gtattttgat-tggattggtcatagagtttccagttcatttatatctaatttgggttcttagtttaatggttccttttatctgttagATAACATTCTTGAAGCAATTGCTAAATTGGGATTTACTGAGCCAACACCTATACAAGCTCAGGGATGGCCGATGGCGTTGAAGGGTAGGGATTTGATTGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294964313|gb|GW838116.1|GW838116EST: CTATGATGTCCCGAAGCCTATCCGACACTTTCAAGAGGCAAATTTCCCTG GGTATTGCCTTGAGGTGATTGCTAAATAGGGTTTAGTAGAGCCAACGCCTA
genomic: CTATGATGTCCCGAAGCCTATCCGACACTTTCAAGAGGCAAATTTCCCTGgtatttcatc ... cacttgacagGGTATTGCCTTGAGGTGATTGCTAAATTGGGTTTTGTTGAGCCAACGCCTA
EST:
gi|161712720|gb|FC062292.1|FC062292EST: CTATGATGTCCCGAAGCCTATCCGACACTTTCAAGAGGCAAATTTCCCTG GGTATTGCCTTGAGGTGATTGCTAAATTGGGTTTTGTTGAGCCAACGCCTA
genomic: CTATGATGTCCCGAAGCCTATCCGACACTTTCAAGAGGCAAATTTCCCTGgtatttcatc ... cacttgacagGGTATTGCCTTGAGGTGATTGCTAAATTGGGTTTTGTTGAGCCAACGCCTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaatctcaattttgtacgtgtaacttttagctgattgagcttgttcacttgacagGGTATTGCCTTGAGGTGATTGCTAAATTGGGTTTTGTTGAGCCAACGCCTATTCAGGCTCAAGGATGGCCAATGGCCTTAAAGGGTAGAGATTTAATTGG
cttgttc CT-rich tract
aattttgta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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gtatttcatcgttaaatggtgtcgcgctgtgaatctcaattttgtacgtgtaacttttagctgattgagcttgttcacttgacagGGTATTGCCTTGAGGTGATTGCTAAATTGGGTTTTGTTGAGCCAACGCCTATTCAGGCTCAAGGATGGCCAATGGCCTTAAAGGGTAGAGATTTAATTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG