Sequence
atgc intronic sequence ATGC exonic sequence...gtgcacttctctatattagaaattaggttatgctttcaattccttcttagatctttttaactgttgctagatttccttgacagaagtttctttattgcagCCCATGCTTTGTGTCAGTGCTGTTAATCCTTTCCTATTCTCGAAGGTCCCAGCCTTGCTTCATGTTACAGGTGTCAGAAAGAAGATAGGAGCTATTCTTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g08610.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G107111_T01 (Zea mays), 3'ss of exon 2
----------------------gtgcacttctctatattagaaattaggttatgc-tttcaattccttcttagatctttttaactgttgctagatttccttgaca-gaagtttctttattgcagCCCATGCTTTGTGTCAGTGCTGTTAATCCTTTCCTATTCTCGAAGGTCCCAGCCTTGCTTCATGTTACAGGTGTCAGAAAGAAGATAGGAGCTATTCTTC
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gtaatgataaacttaaactgtatggtgcttatttat-ttgttagttccaaaatgcactacaaaatataaatctactttcatacatttttttggacctgaagcaaatgatgatttgcattttcagCCTATGCTCTGTGTAAGTGCAGTCAATCCTTTCCTATTCTCGAAAGTACCAGCTCTGCTTAACATCATGAGTGTCCGGAAGAAAATAGCAGCTATGCTTC
upper sequence: Vv17s0000g08610.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA06G19200.1 (Glycine max), 3'ss of exon 6
gtgcacttctctatattagaaattaggttatgctttcaattccttcttagatctttttaactgttg---ctagatttccttgaca-gaagtttctttattgcagCCCATGCTTTGTGTCAGTGCTGTTAATCCTTTCCTATTCTCGAAGGTCCCAGCCTTGCTTCATGTTACAGGTGTCAGAAAGAAGATAGGAGCTATTCTTC
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--gcatgttattcttttccttcctgtcctttctttctttgtatatttgaagttattcttactattcaccttgcatttttttcttatgaaatttctcc--tgcagCCCATGCTTTGTGTCACTGCTGTTAATCCCTTCCTTTTGTCAAAGGTCCCAGCCTTGCTTCATATTATGAGTGTCAGAAAAAAGATAGGTACAATGCTTC
upper sequence: Vv17s0000g08610.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA04G35780.1 (Glycine max), 3'ss of exon 6
-----gtgcacttctcta-tattagaaattaggttatgc-tttcaattccttcttagatctttttaactgttgctagatttccttgacagaagtttctttattgcagCCCATGCTTTGTGTCAGTGCTGTTAATCCTTTCCTATTCTCGAAGGTCCCAGCCTTGCTTCATGTTACAGGTGTCAGAAAGAAGATAGGAGCTATTCTTC
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atgctatacttttccttcctgtcctttctttctttgtatatttgaagttattctta---ctatttacct--tgcatttttttttcgtacgaaatttctcc--tgcagCCCATGCTTTGTGTCACTGCCGTTAATCCCTTCCTTTTGTCAAAGGTCCCAGCCTTGCTTCATATTATGAGTGTCAGAAAAAAGATAGGTACAATGCTTCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71887894|gb|DT036949.1|DT036949EST: CTGGATTCTATCCATGATCAG CCCATGCTTTGTGTCAGTGCTGTTAATCCTTTCCTATTCTCGAAGGTCCCA
genomic: CTGGATTCTATCCATGATCAGgtaatctaaa ... tttattgcagCCCATGCTTTGTGTCAGTGCTGTTAATCCTTTCCTATTCTCGAAGGTCCCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttagatctttttaactgttgctagatttccttgacagaagtttctttattgcagCCCATGCTTTGTGTCAGTGCTGTTAATCCTTTCCTATTCTCGAAGGTCCCAGCCTTGCTTCATGTTACAGGTGTCAGAAAGAAGATAGGAGCTATTCTTC
tttctttatt CT-rich tract
atctttttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgcacttctctatattagaaattaggttatgctttcaattccttcttagatctttttaactgttgctagatttccttgacagaagtttctttattgcagCCCATGCTTTGTGTCAGTGCTGTTAATCCTTTCCTATTCTCGAAGGTCCCAGCCTTGCTTCATGTTACAGGTGTCAGAAAGAAGATAGGAGCTATTCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - -agaaatt
- - - - - - - - - - - - - - - tgctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttccttg