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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttcaatgttgttgggggtaatcctgttttcaaattattgaatttacattgcacttcttattgtgtctattcattttacagCTTGTAGCAATCCTGCCACTTGCTGTGGTGCACACGTTAGGCAACCTGTTTACTAATATGAGTCTTGGGAAAGTGTCTGTTTCATTCACTCACACAATTA

Basic information

species Vitis vinifera
transcript Vv17s0000g08560.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g08560.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA04G35730.1 (Glycine max), 3'ss of exon 2
gtatttcaatgttgttgggggtaatcctgttttcaaattattgaatt-tacattgcacttcttattgtgtctattcattttacagCTTGTAGCAATCCTGCCACTTGCTGTGGTGCACACGTTAGGCAACCTGTTTACTAATATGAGTCTTGGGAAAGTGTCTGTTTCATTCACTCACACAATTA
||| ||   | |     | | | |     || |    || ||   || |   |||   |  | ||  ||  | |   | |  ||||||| ||| ||  |||| || ||||  ||||| || || || ||||| || ||||||||||||||||| || ||| |||| || ||||||||||| || |
gtaatttggtctctgctgtgttga----attgttgtgttgttaggttgtgttttgtgttgttaatgttgattgt--gtgtggcagCTTGGAGCGATTTTGCCGCTGGCTGCAGTGCATACTTTGGGGAACCTTTTCACTAATATGAGTCTTGGAAAGGTGGCTGTGTCTTTCACTCACACTATCA

upper sequence: Vv17s0000g08560.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA06G19250.1 (Glycine max), 3'ss of exon 2
gtatttcaatgt-tgttgggggtaatcctgttttcaaattattgaatttacattgcacttcttattgtgtctatt-cattttacagCTTGTAGCAATCCTGCCACTTGCTGTGGTGCACACGTTAGGCAACCTGTTTACTAATATGAGTCTTGGGAAAGTGTCTGTTTCATTCACTCACACAATTA
||| ||   | | || || |   |||  |  | |     | |||  |||    ||   |  | ||  ||  ||||   | |  ||||||| ||| ||  |||| || ||||  ||||| || || || ||||| || |||||||||||||||||||| ||| | || || ||||||||||| || |
gtaatttggtctctgctgtgttgaattgttgtgttgttatgttgtgttt----tgtggtgttaatgttgattattatgtgtggcagCTTGGAGCGATTTTGCCGCTGGCTGCAGTGCATACTTTGGGGAACCTTTTCACTAATATGAGTCTTGGGAAGGTGGCCGTGTCTTTCACTCACACTATCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcaaattattgaatttacattgcacttcttattgtgtctattcattttacagCTTGTAGCAATCCTGCCACTTGCTGTGGTGCACACGTTAGGCAACCTGTTTACTAATATGAGTCTTGGGAAAGTGTCTGTTTCATTCACTCACACAATTA
                                           ttcatttt  CT-rich tract
     aaattattgaatttac  TA-rich tract