1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agtttaggagggtaacagcatcacaagaatatgtcgccttaattcataacagtctatccttcaaacttctaactttgtttgctgtgttcactggttgcagTTTCATAGTTCCAGAGTACAGCTTTCTGGATGCCCGTGGACTGGGAGCTTTTGAAGGCAAGAACTTGGAATCTGTTTCTGAA
species | Vitis vinifera |
transcript | Vv17s0000g08200.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCTTACCAGGCCGCAGAGATCATTGCTTCCGTAAACGGGGTCACCCGGAG TTTCATAGTTCCAGAGTACAGCTTTCTGGATGCCCGTGGACTGGGAGCTTTEST: gi|22008705|gb|BQ793739.1|BQ793739
genomic: GCTTACCAGGCCGCAGAGATCATTGCTTCCGTAAACGGGGTCACCCGGAGgtgtgtgaat ... ctggttgcagTTTCATAGTTCCAGAGTACAGCTTTCTGGATGCCCGTGGACTGGGAGCTTT
EST: GCTTACCAGGCCGCAGAGATCATTGCTTCCGTAAACGGGGTCACCCGGAG TTTCATAGTTCCAGAGTACAGCTTTCTGGATGCCCGTGGACTGGGAGCTTT
genomic: GCTTACCAGGCCGCAGAGATCATTGCTTCCGTAAACGGGGTCACCCGGAGgtgtgtgaat ... ctggttgcagTTTCATAGTTCCAGAGTACAGCTTTCTGGATGCCCGTGGACTGGGAGCTTT
ataacagtctatccttcaaacttctaactttgtttgctgtgttcactggttgcagTTTCATAGTTCCAGAGTACAGCTTTCTGGATGCCCGTGGACTGGGAGCTTTTGAAGGCAAGAACTTGGAATCTGTTTCTGAA
ttctaac putative branch site (score: 1)
taacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtttaggagggtaacagcatcacaagaatatgtcgccttaattcataacagtctatccttcaaacttctaactttgtttgctgtgttcactggttgcagTTTCATAGTTCCAGAGTACAGCTTTCTGGATGCCCGTGGACTGGGAGCTTTTGAAGGCAAGAACTTGGAATCTGTTTCTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - tcacaag
- - - - - - - - - - - - - - - -tgtcgcc
- - - - - - - - - - - - - - - - - - - - - - cataaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgttc