1 5' 3' | 2 5' 3' | 3 5' 3' |
...tcaccaattccgtagagccttctgttttctttgctaattaatgaatttgctgacatgagcttcaaatggattgatcataagttgctttctaaatgtatagGAAAATGGACATTCTTCCATGTATACTTGGATATTGAGCACTGGTTGGTGGAAGAACCGTGCACCTGTCAATCCTGACGCTGTTGTAGTAGTTGGCTTCT
species | Vitis vinifera |
transcript | Vv17s0000g08020.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGATATCGGCTGGTTCTTTATCACACTTTTTCTTGGACCACTTGTTTGAG GAAAATGGACATTCTTCCATGTATACTTGGATATTGAGCACTGGTTGGTGGEST: gi|33405772|gb|CF211399.1|CF211399
genomic: TGATATCGGCTGGTTCTTTATCACACTTTTTCTTGGACCACTTGTTTGAGgtagtacaca ... aaatgtatagGAAAATGGACATTCTTCCATGTATACTTGGATATTGAGCACTGGTTGGTGG
EST: TGATATCGGCTGGTTCTTTATCACACTTTTTCTTGGACCACTTGTTTGAG GAAAATGGACATTCTTCCATGTATACTTGGATATTGAGCACTGGTTGGTGGEST: gi|161719497|gb|FC067695.1|FC067695
genomic: TGATATCGGCTGGTTCTTTATCACACTTTTTCTTGGACCACTTGTTTGAGgtagtacaca ... aaatgtatagGAAAATGGACATTCTTCCATGTATACTTGGATATTGAGCACTGGTTGGTGG
EST: TGATATCGGCTGGTTCTTTATCACACTTTTTCTTGGACCACTTGTTTGAG GAAAATGGACATTCTTCCATGTATACTTGGATATTGAGCACTGGTTGGTGG
genomic: TGATATCGGCTGGTTCTTTATCACACTTTTTCTTGGACCACTTGTTTGAGgtagtacaca ... aaatgtatagGAAAATGGACATTCTTCCATGTATACTTGGATATTGAGCACTGGTTGGTGG
tttgctgacatgagcttcaaatggattgatcataagttgctttctaaatgtatagGAAAATGGACATTCTTCCATGTATACTTGGATATTGAGCACTGGTTGGTGGAAGAACCGTGCACCTGTCAATCCTGACGCTGTTGTAGTAGTTGGCTTCT
ttctaaa putative branch site (score: 2)
ctttcta CT-rich tract
tttctaaatgtata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaccaattccgtagagccttctgttttctttgctaattaatgaatttgctgacatgagcttcaaatggattgatcataagttgctttctaaatgtatagGAAAATGGACATTCTTCCATGTATACTTGGATATTGAGCACTGGTTGGTGGAAGAACCGTGCACCTGTCAATCCTGACGCTGTTGTAGTAGTTGGCTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
tcaccaa
- - - - - - - -agccttc
- - - - - - - - - - - - - - - - - - - - - - - ttgctga
- - - - - - - - - - - - - - - - - - - - - - - - - - -catgagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgga