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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcttgcttttaaacctttaaaccattaatcacaatgtatgtttacctgttttgatttgagttcttgggtatgtgatgtcttgggtagCGAGGATCAGGCAAGGGTTTATATTGCTGAGATAGTATCTGCTGTTTCCCATCTTCACAAGAGCGGCATCGTACATCGGGATCTTAAACCTGAAAATATT

Basic information

species Vitis vinifera
transcript Vv17s0000g07520.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g07520.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA17G10270.1 (Glycine max), 3'ss of exon 2
gtatcttgcttttaaacctttaaaccattaa---tcacaatgtatgttt----acctgttttgatttgagtt-----------cttgggtatgtg-atgtcttgggtagCGAGGATCAGGCAAGGGTTTATATTGCTGAGATAGTATCTGCTGTTTCCCATCTTCACAAGAGCGGCATCGTACATCGGGATCTTAAACCTGAAAATATT
|||||||  | || | | | | |||  ||||   |  |||  || || |    |    |||| |||| | ||            |||| | |||| |||| ||| |||| ||||||||||||||| |||| | |||||||||||| ||||||||||| || |||||||| | ||||||||| ||||| |||||||| || ||||| |||
gtatctttttcttcatcatgttaactgttaagtattgcaacctacgtatttaaaagaattttaattttaattatggctttggttttggttttgtgtatgtgttgagtagTGAGGATCAGGCAAGGCTTTACACTGCTGAGATAGTGTCTGCTGTTTCACACCTTCACAAAAACGGCATCGTGCATCGAGATCTTAAGCCCGAAAACATT

upper sequence: Vv17s0000g07520.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA05G01620.1 (Glycine max), 3'ss of exon 2
-----------------------gtatcttgcttttaaacctttaaaccattaatcacaatgtatgtttacctgttttgatttgagttcttgggtatgtg-atgtcttgggtagCGAGGATCAGGCAAGGGTTTATATTGCTGAGATAGTATCTGCTGTTTCCCATCTTCACAAGAGCGGCATCGTACATCGGGATCTTAAACCTGAAAATATT
                          | ||||     |    || ||  ||  ||    || ||| | ||  |  ||| | ||  |   |||| |  ||| |||| ||| |||| || |||||| ||||| |||| | |||||||||||||||||||||||| |  |||||||| |  |||||||| ||||| |||||||| || ||||| |||
gtattttttttcttcatcatgctaagtattgcagcctacgtatttaaatatatatatatatatatatatatataattttaattatggctttggtttggtgtatgtgttgagtagTGATGATCAGACAAGGCTTTACACTGCTGAGATAGTATCTGCTGTTTCACCCCTTCACAAAAATGGCATCGTGCATCGAGATCTTAAGCCCGAAAACATT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgtatgtttacctgttttgatttgagttcttgggtatgtgatgtcttgggtagCGAGGATCAGGCAAGGGTTTATATTGCTGAGATAGTATCTGCTGTTTCCCATCTTCACAAGAGCGGCATCGTACATCGGGATCTTAAACCTGAAAATATT
                ttttgat  putative branch site (score: 4)
                ttttgattt  TA-rich tract