Sequence
atgc intronic sequence ATGC exonic sequencegttaactaaactagatcttatgaatcttcaaatgccctgcacatgatacaaaagttgggcattttttaagtctttttgaaatgattaaattttggaatatggttttgtaggacatgcttcacagggttgtaaattgtgggtggaattgtaatttgggtattgttttatgcagGTGGTCAGCTATAGCAACCCACTTACCAAATAGAACAGACAATGAGATCAAGAATTATTGGAACACACATCTCAAGAAAAGGTTGGCCAAGATGGGAATA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g06410.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os08g33660.1 (Oryza sativa), 3'ss of exon 2
gttaactaaactagatcttatgaatcttcaaatgccctgcacatgatacaaaagttgggcattttttaagtctttttgaaat-gattaaattttggaatatggttttgtaggacatgcttcacagggttgtaaattgtgggtggaattgtaatttgggtattgttttatgcagGTGGTCAGCTATAGCAACCCACTTACCAAATAGAACAGACAATGAGATCAAGAATTATTGGAACACACATCTCAAGAAAAGGTTGGCCAAGATGGGAATA
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----------------------------------------------------------------------catctctgcatccggctgtcctctaagat-tgatgcaaacaaaagaacaacaaaaatccttgaatattaagctca--caaggttttcccctgttcctgttcagGTGGTCTGCCATTGCAACACATCTACCAAAGCGCACTGACAATGAGATCAAGAACTATTGGAACACCCACCTGAAAAAGAGGTTGGCCAAGATGGGAATT
upper sequence: Vv17s0000g06410.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G079123_T01 (Zea mays), 3'ss of exon 1
gttaactaaactagatcttatgaatcttcaaatgccctgcacatgatacaaaagttgggcattttttaagtctttttgaaatgattaaattttggaatatggttttgtaggacatgcttcacagggttgtaaattgtgggtggaattgtaatttgggtattgttttatgcagGTGGTCAGCTATAGCAACCCACTTACCAAATAGAACAGACAATGAGATCAAGAATTATTGGAACACACATCTCAAGAAAAGGTTGGCCAAGATGGGAATA
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--------------------------------------------------------------ctcttagttctgtactccaacctagaatttcggcatacatggtagatgaatacaagatgttaattt-taaatcataggt----tcgtttcatggcacttgtt-----cagGTGGTCGGCCATTGCAACCCATCTACCAAATCGCACGGACAATGAGATCAAGAACTACTGGAACACACACCTCAAGAAAAGGCTGGCCAAGATGGGGATC
upper sequence: Vv17s0000g06410.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G111117_T01 (Zea mays), 3'ss of exon 2
gttaactaaactagatcttatgaatcttcaaatgccctgcacatgatacaaaagttgggcattttttaagtctttttgaaatgattaaattttggaata--tggttttgtaggacatgcttcacagggttgtaaattgtgggtggaattgtaatttg-ggtattgttttatgcagGTGGTCAGCTATAGCAACCCACTTACCAAATAGAACAGACAATGAGATCAAGAATTATTGGAACACACATCTCAAGAAAAGGTTGGCCAAGATGGGAATA
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----------------------------------------------------------------------cttccttcacaacgtagaatttcggcacacatggtatattggtagatgaaa-acaagatgttaatttcaaagtatacctttgtttcatggtactgttt----cagGTGGTCGGCCATTGCAACACATCTACCAAATCGCACGGACAACGAGATCAAGAACCACTGGAACACGCACCTCAAGAAAAGGCTGGCCAAGATTGGGATC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcacagggttgtaaattgtgggtggaattgtaatttgggtattgttttatgcagGTGGTCAGCTATAGCAACCCACTTACCAAATAGAACAGACAATGAGATCAAGAATTATTGGAACACACATCTCAAGAAAAGGTTGGCCAAGATGGGAATA
ttgtttt CT-rich tract
aattgtaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttaactaaactagatcttatgaatcttcaaatgccctgcacatgatacaaaagttgggcattttttaagtctttttgaaatgattaaattttggaatatggttttgtaggacatgcttcacagggttgtaaattgtgggtggaattgtaatttgggtattgttttatgcagGTGGTCAGCTATAGCAACCCACTTACCAAATAGAACAGACAATGAGATCAAGAATTATTGGAACACACATCTCAAGAAAAGGTTGGCCAAGATGGGAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG