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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataacatatatcaaaagcccaaaaccctaaaaccccctattataattaagtgaatttttattatggtaataccaacatatatgtcatgtatcttattgttgaatcgctcctaaatttttcgttcctatactttcagGTGAATGAAGAGGTGGAACGTGGGTTAGTACGTGGTGCTCGCTCTTTGACTTGGTCTCCATCCTTGAGAATCCATGGGCCAGAACCATCAAACTTGCAGC

Basic information

species Vitis vinifera
transcript Vv17s0000g03380.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161714081|gb|FC063805.1|FC063805
EST:     ATTCATGGCAGAACATCTGTACGGCCTTGGAACCAATGCTTAGAAGAGTG                         GTGAATGAAGAGGTGGAACGTGGGTTAGTACGTGGTGCTCGCTCTTTGACT
genomic: ATTCCTGGCAGAACATCTGTACGGCCTTGGAACCAATGCTTAGAAGAGTGgtataacata ... atactttcagGTGAATGAAGAGGTGGAACGTGGGTTAGTACGTGGTGCTCGCTCTTTGACT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcatgtatcttattgttgaatcgctcctaaatttttcgttcctatactttcagGTGAATGAAGAGGTGGAACGTGGGTTAGTACGTGGTGCTCGCTCTTTGACTTGGTCTCCATCCTTGAGAATCCATGGGCCAGAACCATCAAACTTGCAGC
                          tcctaaa  putative branch site (score: 2)
                                 tttttcgttcctat  CT-rich tract
                             taaattttt  TA-rich tract