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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgagtttctctctctccactacatgcacccatggacacatagccagccaccctttctttgttttattttttttattgatgtttgatttaatttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG

Basic information

species Vitis vinifera
transcript Vv17s0000g02900.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os01g49190.1 (Oryza sativa), 3'ss of exon 2
ttgagtttctctctctccactacatgcacccatggacacatagccagccaccct-ttctttgttttatttttttta-ttgatgtttgatttaattt-caacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG
 | ||| |   |     |  |   |  |    | |    ||    |   ||  | || | |   ||||  | |||| ||  || ||   ||  ||| | |||| |||  | ||||| || ||||||||||| ||||| ||  | |||||||| || ||||| || |||||||||||||||||||||||||||
gtaagtctaaatgatatccatttgtatatt-gtaggtgtatgcatacatactatattttcttccttatgatctttagttattgattacctttctttgccacagCAACAAACCACTTCCTCCCTATCCATCGTGAAGCCCCTGCTTTTGTTGAGCAAGCTACAGAGCAACAGATTCTTGTTACTGGAATTAAG

upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G021331_T01 (Zea mays), 3'ss of exon 2
ttgagtttctctctctccactacatgcacccatggacacatagccagccaccctttctttgttttattttttttattgatgtttgatttaatttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG
                  | |   || ||  ||||  |  ||    ||  |    | | ||    |  |||| ||    |  |   |||   |    |||  ||  | ||||| || ||||||||||| ||||| ||  | || ||||| ||||| ||||| || || ||||||||||||||||| |||
---------------gtaagtgtctggacttatgg-tatgtattttgcttcaaggtgtctggaagagcttttgtaaaccttctacctttccatatttcagCGACAAACCACTTCCTCCCTATCCATCGTGAAGCCCCTGCTTTCGTTGAGCAGGCCACTGAGCAGCAAATTCTTGTTACTGGAATCAAG

upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G113408_T03 (Zea mays), 3'ss of exon 2
ttgagtttctctctctccactacatgcacccatggacacatagccagccaccctttctttgttttattttttttattgatgtttgatttaatttca--acagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG-----------
                  |     ||  |  ||||     ||    ||       | |||||   ||   ||| ||  || ||     |   |  |   |||| ||  | ||||| || ||||| ||||| ||||| ||  | |||||||| ||||| ||||| || || ||||||||||||||||| |||           
---------------gtaagagtctgggcttatggtt---tattttgcttgaaggtgtttgtggaatagctttcataaatcttatgcctttctatatttcagAGACAAACCACTTCCTCCCTATTCATCGTGAAGCCCCTGCTTTTGTTGAGCAGGCCACTGAGCAGCAAATTCTTGTTACTGGAATCAAGGTAGTCTTGTT

upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G113408_T02 (Zea mays), 3'ss of exon 2
ttgagtttctctctctccactacatgcacccatggacacatagccagccaccctttctttgttttattttttttattgatgtttgatttaatttca--acagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG
                  |     ||  |  ||||     ||    ||       | |||||   ||   ||| ||  || ||     |   |  |   |||| ||  | ||||| || ||||| ||||| ||||| ||  | |||||||| ||||| ||||| || || ||||||||||||||||| |||
---------------gtaagagtctgggcttatggtt---tattttgcttgaaggtgtttgtggaatagctttcataaatcttatgcctttctatatttcagAGACAAACCACTTCCTCCCTATTCATCGTGAAGCCCCTGCTTTTGTTGAGCAGGCCACTGAGCAGCAAATTCTTGTTACTGGAATCAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351023372|gb|FQ432755.1|FQ432755
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
EST: gi|110732337|gb|EE107534.1|EE107534
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACCGATCACTTTCTGCCCATCCATCGAGAAGCTCCATCCTTTGTTGACC
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
EST: gi|110724937|gb|EE101202.1|EE101202
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACCGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
EST: gi|351022146|gb|FQ438731.1|FQ438731
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
EST: gi|161707022|gb|FC055130.1|FC055130
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACCGATCACTTTCTGCCCATCCATCGAGAAGCTCCATCCTTTGTTGACC
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
EST: gi|351019677|gb|FQ439494.1|FQ439494
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
EST: gi|110688946|gb|EE068082.1|EE068082
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACCGATCACTTTCTGCCCATCCATCGAGAAGCTCCATCCTTTGTTGACC
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
EST: gi|110389138|gb|EC953954.1|EC953954
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACCGATCACTTTCTGCCCATCCATCGAGAAGCTCCATCCTTTGTTGACC
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
EST: gi|110359453|gb|EC920958.1|EC920958
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACCGATCACTTTCTGCCCATCCATCGAGAAGCTCCATCCTTTGTTGACC
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
EST: gi|351015254|gb|FQ445538.1|FQ445538
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACCGATCACTTTCTGCCCATCCATCGAGAAGCTCCATCCTTTGTTGACC
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
EST: gi|110702280|gb|EE080812.1|EE080812
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACCGATCACTTTCTGCCCATCCATCGAGAAGCTCCATCCTTTGTTGACC
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
EST: gi|71859328|gb|DT008383.1|DT008383
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACCGATCACTTTCTG
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTG
EST: gi|351047137|gb|FQ454747.1|FQ454747
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
EST: gi|351025232|gb|FQ433649.1|FQ433649
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
EST: gi|161721398|gb|FC071064.1|FC071064
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACCGATCACTTTCTGCCCATCCATCGAGAAGCTCCATCCTTTGTTGACC
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
EST: gi|37185276|gb|CF604629.1|CF604629
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACCGATCACTTTCTGCCCATCCAT
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTGCCTATCCAT
EST: gi|161718420|gb|FC064789.1|FC064789
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACCGATCACTTTCTGCCCATCCATCGAGAAGCTCCATCCTTTGTTGACC
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
EST: gi|351027762|gb|FQ446929.1|FQ446929
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACCGATCACTTTCTGCCCATCCATCGAGAAGCTCCATCCTTTGTTGACC
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
EST: gi|349823703|gb|FQ415113.1|FQ415113
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
EST: gi|351028401|gb|FQ427297.1|FQ427297
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
EST: gi|351026662|gb|FQ436315.1|FQ436315
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACCGATCACTTTCTGCCCATCCATCGAGAAGCTCCATCCTTTGTTGACC
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
EST: gi|349826477|gb|FQ418568.1|FQ418568
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACCGATCACTTTCTGCCCATCCATCGAGAAGCTCCATCCTTTGTTGACC
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
EST: gi|352789612|gb|FQ476210.1|FQ476210
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACCGATCACTTTCTGCCCATCCATCGAGAAGCTCCATCCTTTGTTGACC
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
EST: gi|110726783|gb|EE102867.1|EE102867
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACCGATCACTTTCTGCCTATCCATCGAGAAACTCCATCCTTTGTTGATC
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
EST: gi|349823820|gb|FQ415231.1|FQ415231
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
EST: gi|351030186|gb|FQ432124.1|FQ432124
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
EST: gi|161719858|gb|FC069012.1|FC069012
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACCGATCACTTTCTGCCCATCCATCGAGAAGCTCCATCCTTTGTTGACC
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
EST: gi|161715733|gb|FC066137.1|FC066137
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACCGATCACTTTCTGCCCATCCATCGAGAAGCTCCATCCTTTGTTGACC
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
EST: gi|351022190|gb|FQ438775.1|FQ438775
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
EST: gi|351030612|gb|FQ437038.1|FQ437038
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
EST: gi|110356708|gb|EC919733.1|EC919733
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACCGATCACTTTCTGCCCATCCATCGAGAAGCTCCATCCTTTGTTGACC
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
EST: gi|352782351|gb|FQ470254.1|FQ470254
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
EST: gi|352787189|gb|FQ477809.1|FQ477809
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACCGATCACTTTCTGCCCATCCATCGAGAAGCTCCATCCTTTGTTGACC
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
EST: gi|349826538|gb|FQ418629.1|FQ418629
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
EST: gi|352773165|gb|FQ470780.1|FQ470780
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
EST: gi|110698394|gb|EE075844.1|EE075844
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACCGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
EST: gi|351022974|gb|FQ428883.1|FQ428883
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
EST: gi|351040271|gb|FQ425357.1|FQ425357
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
EST: gi|352795075|gb|FQ477185.1|FQ477185
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACCGATCACTTTCTGCCCATCCATCGAGAAGCTCCATCCTTTGTTGACC
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
EST: gi|351028760|gb|FQ433190.1|FQ433190
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACCGATCACTTTCTGCCCATCCATCGAGAAGCTCCATCCTTTGTTGACC
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
EST: gi|71860596|gb|DT009651.1|DT009651
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACCGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
EST: gi|349823819|gb|FQ415230.1|FQ415230
EST:     ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAA                         AAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC
genomic: ACGGATCATAAATGTTATTGGAGAGCCTATTGATGAGAGGGGTGACATAAgtaagaaaca ... atttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agccaccctttctttgttttattttttttattgatgtttgatttaatttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG
        tttctttgttttattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttgagtttctctctctccactacatgcacccatggacacatagccagccaccctttctttgttttattttttttattgatgtttgatttaatttcaacagAAACTGATCACTTTCTGCCTATCCATCGAGAAGCTCCATCCTTTGTTGATCAGGCTACTGAACAACAGATTCTTGTTACTGGAATTAAG

- - - - ctctctc
- - - - - - - - -cactaca
- - - - - - - - - - - - -gcaccca
- - - - - - - - - - - - - - - - - -acacata