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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtttttaagtcttttttttaattatatatataatctgtttcatttttgccttgtttcaaatatttgaagaaataattgaaaactactgatgtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG

Basic information

species Vitis vinifera
transcript Vv17s0000g02680.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g02680.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os03g49600.2 (Oryza sativa), 3'ss of exon 2
----gtttttaagtcttttttttaattatatatataatctgtttcatttttgccttgtttcaaatatttgaagaaataattgaaaactactgatgtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG
    | | | || | |   | |  |   | | || | |   | | | | || || | | || | ||| | || ||| | |  |    | |||       ||||||||||| |  | || ||||| ||| | |||||||| || ||||| || |||||||||||||||||||| |||||||
aaatgctctaaaatatgcgtgtccaaggtct-tacattacatgtaagtgtttccat-tctccattatctaaaaaaaaagtgtatccattctgg------aacaggaagATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG

upper sequence: Vv17s0000g02680.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os03g49600.3 (Oryza sativa), 3'ss of exon 2
--------gtttttaagtcttttttttaattatatatataatctgtttcatttttgccttgtttcaaatatttgaagaaataattgaaaactactgatgtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG
        | | | || | |   | |  |   | | || | |   | | | | || || | | || | ||| | || ||| | |  |    | |||       ||||||||||| |  | || ||||| ||| | |||||||| || ||||| || |||||||||||||||||||| |||||||
ctgtaaatgctctaaaatatgcgtgtccaaggtct-tacattacatgtaagtgtttccat-tctccattatctaaaaaaaaagtgtatccattctgg------aacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG

upper sequence: Vv17s0000g02680.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AC217401.3_FGT001 (Zea mays), 3'ss of exon 2
-----------------------gtttttaagtcttttttttaattatatatataatctgtttcatttttgccttgtttcaaatatttgaagaaata-attgaaaactactgatgtg-----ttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG
                        |  |  ||||  | | |  |   | |||      ||    | |||||   |     |||   |   |||  |  | |     ||  ||   ||     ||  ||||||||| | ||||| ||||| ||| | |||||||| || ||||| || |||||||||||||||||||| |||||||
gtactgctccttattatatgacaatgctagagtccatctatctaggttttatgctgg-tgaaaaacttttgaagtaaaagaaagtctgttagacttgtacttggtccttttgtcatgcaacattttcagGAAGATGTCGACCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG

upper sequence: Vv17s0000g02680.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AC217401.3_FGT002 (Zea mays), 3'ss of exon 2
----gtttttaagtcttttttttaattatatatataatctgtttcatttttgccttgtttcaaatatttgaagaaataattgaaaactactgatgtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG
          ||  | | |          ||  |||||   |||     ||     ||  | | |  ||  ||    ||||         |      |  |||||||||| | || || ||||| || || |||||||| |||||||| || |||||||| ||||||||||| |||||||
tgaaacgaacaaaacatctcacgctgagaattaataattcatttagaaatta----gtaactatttcttttagtctgaatttggcttctttatcccttgtacagGAAGATGTTGATCTCATGAAAAGCCTAAATTTTGATGCATACCGGTTTTCAATCTCCTGGTCCAGGATCTTCCCAG

upper sequence: Vv17s0000g02680.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G118003_T02 (Zea mays), 3'ss of exon 2
gtttttaagtcttttttttaattatat-atataatctgtttcatttttgccttgtttcaaat--atttgaagaaataattgaaaactact--gatgtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG
              |  |||| |||   |   ||        || |  ||   |   |||     ||||| |   | || |  ||||  |  | | || |  ||||||||  | || || ||||| ||| | || ||||| || ||||| ||||||||||||||||||||||| ||||| |
-------------gtacttaactatgcgaagcaaataaaccgatctgggctgagacacaagagagtttgatgcctttatcgttaactcttttgttctgctt-cagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG

upper sequence: Vv17s0000g02680.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA09G30910.1 (Glycine max), 3'ss of exon 2
gtttttaagtcttttttttaattatatatataatctgtttcatttttgccttgtttcaaatatttgaagaaataattgaaaactactg-atgtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG
     ||  | |  || |    || || |  | | ||| |  |  |||  ||||  |   | ||            || ||   |||   |   || ||||||||||||||| || |||   || || |||||||| || ||||| ||||||||||| |||||||| ||||| ||| 
-gaagtacatttgattatattgtaaatgttcattatgtattgtgattgagttgtccctcttgttgttcttctctgctggaataaactctgtaatttgacagGAAGATATAGATCTCATGGCCAGCCTGAATTTTGATGCCTACCGGTTCTCAATCTCGTGGTCCAGAATTTTTCCAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351038587|gb|FQ464453.1|FQ464453
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|351042229|gb|FQ442696.1|FQ442696
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|351055479|gb|FQ442275.1|FQ442275
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|351015813|gb|FQ431768.1|FQ431768
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|349820199|gb|FQ406875.1|FQ406875
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|349828779|gb|FQ419112.1|FQ419112
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|351033074|gb|FQ446427.1|FQ446427
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTACCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|352794098|gb|FQ479340.1|FQ479340
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|351026942|gb|FQ436595.1|FQ436595
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|351045661|gb|FQ440846.1|FQ440846
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|351041781|gb|FQ455991.1|FQ455991
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|351022837|gb|FQ428746.1|FQ428746
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|352790099|gb|FQ479709.1|FQ479709
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|349833003|gb|FQ416381.1|FQ416381
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|349824288|gb|FQ417699.1|FQ417699
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTACCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|110691322|gb|EE069288.1|EE069288
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|351023766|gb|FQ448317.1|FQ448317
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTACCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|351042412|gb|FQ442879.1|FQ442879
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|349828121|gb|FQ415449.1|FQ415449
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|349821869|gb|FQ413040.1|FQ413040
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|110690437|gb|EE067536.1|EE067536
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|349807852|gb|FQ402243.1|FQ402243
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|351038429|gb|FQ464295.1|FQ464295
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|349830823|gb|FQ417121.1|FQ417121
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|349824165|gb|FQ417552.1|FQ417552
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTACCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|351042983|gb|FQ434424.1|FQ434424
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTACCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|351049247|gb|FQ428990.1|FQ428990
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|351042839|gb|FQ451133.1|FQ451133
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGGTATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|351021685|gb|FQ437070.1|FQ437070
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|351019070|gb|FQ426569.1|FQ426569
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|110686135|gb|EE063475.1|EE063475
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|351038347|gb|FQ461039.1|FQ461039
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|351042390|gb|FQ442857.1|FQ442857
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|351016597|gb|FQ424024.1|FQ424024
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|351019040|gb|FQ426539.1|FQ426539
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|349820204|gb|FQ406880.1|FQ406880
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|351016480|gb|FQ423907.1|FQ423907
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|351024209|gb|FQ423632.1|FQ423632
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|349818794|gb|FQ409328.1|FQ409328
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|351032953|gb|FQ461842.1|FQ461842
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|110687898|gb|EE065834.1|EE065834
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|110688342|gb|EE066782.1|EE066782
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|349811511|gb|FQ409507.1|FQ409507
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|349829906|gb|FQ422219.1|FQ422219
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|351012024|gb|FQ429830.1|FQ429830
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|349828601|gb|FQ418336.1|FQ418336
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|351054304|gb|FQ450387.1|FQ450387
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|351031036|gb|FQ444863.1|FQ444863
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACCAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|110690651|gb|EE067999.1|EE067999
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|351055113|gb|FQ440452.1|FQ440452
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|352798358|gb|FQ480383.1|FQ480383
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|352794496|gb|FQ481729.1|FQ481729
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA
EST: gi|349828289|gb|FQ416242.1|FQ416242
EST:     CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG                         GAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCTTACCGCTTCTCA
genomic: CGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAGgtaaattttc ... gtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgccttgtttcaaatatttgaagaaataattgaaaactactgatgtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG
                                      tactgat  putative branch site (score: 2)
        tttcaaatatttgaag  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttttaagtcttttttttaattatatatataatctgtttcatttttgccttgtttcaaatatttgaagaaataattgaaaactactgatgtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - ctgtttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaacta