1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgctgtgtgttgtaatgttgttatttttttctcttcatgggtatgtattgtgctgaacttgttctgattttatgtttggtgttccccttctttacacaagAAACTTGCAACTGGGGAAATTCTGCCAGCTGCTTCCGAACAACCAGTGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATT
species | Vitis vinifera |
transcript | Vv17s0000g02550.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGAAAG AAACTTGCAACTGGGGAAATTCTGCCAGCTGCTTCCGAACAACCAGTGGCAEST: gi|71872985|gb|DT022040.1|DT022040
genomic: CGAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGAAAGgtgagatcac ... tttacacaagAAACTTGCAACTGGGGAAATTCTGCCAGCTGCTTCCGAACAACCAGTGGCA
EST: CCAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGAAAG AAACTTGCAACTGGGGAAATTCTGCCAGCTGCTTCCGAACAACCAGTGGCAEST: gi|351052028|gb|FQ455321.1|FQ455321
genomic: CGAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGAAAGgtgagatcac ... tttacacaagAAACTTGCAACTGGGGAAATTCTGCCAGCTGCTTCCGAACAACCAGTGGCA
EST: CCAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGAAAG AAACTTGCAACTGGGGAAATTCTGCCAGCTGCTTCCGAACAACCAGTGGCAEST: gi|110361389|gb|EC924857.1|EC924857
genomic: CGAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGAAAGgtgagatcac ... tttacacaagAAACTTGCAACTGGGGAAATTCTGCCAGCTGCTTCCGAACAACCAGTGGCA
EST: CGAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGAAAG AAACTTGCAACTGGGGAAATTCTGCCAGCTGCTTCCGAACAACCAGTGGCAEST: gi|351044429|gb|FQ442960.1|FQ442960
genomic: CGAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGAAAGgtgagatcac ... tttacacaagAAACTTGCAACTGGGGAAATTCTGCCAGCTGCTTCCGAACAACCAGTGGCA
EST: CCAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGATAG AAACTTGCAACTGGGGAAATTCTGCCAGCTGCTTCCGAACAACCAGTGGCAEST: gi|352781293|gb|FQ467374.1|FQ467374
genomic: CGAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGAAAGgtgagatcac ... tttacacaagAAACTTGCAACTGGGGAAATTCTGCCAGCTGCTTCCGAACAACCAGTGGCA
EST: CGAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGAAAG AAACTTGCAACTGGGGAAATTCTGCCAGCTGCTTCCGAACAACCAGTGGCAEST: gi|352767930|gb|FQ466139.1|FQ466139
genomic: CGAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGAAAGgtgagatcac ... tttacacaagAAACTTGCAACTGGGGAAATTCTGCCAGCTGCTTCCGAACAACCAGTGGCA
EST: CGAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGAAAG AAACTTGCAACTGGGGAAATTCTGCCAGCTGCTTCCGAACAACCAGTGGCAEST: gi|161720314|gb|FC071167.1|FC071167
genomic: CGAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGAAAGgtgagatcac ... tttacacaagAAACTTGCAACTGGGGAAATTCTGCCAGCTGCTTCCGAACAACCAGTGGCA
EST: CCAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGAA-G AAACTTTGCA-CTGGGGAAATTTCTGC-AGCTGCTTEST: gi|352777515|gb|FQ474512.1|FQ474512
genomic: CGAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGAAAGgtgagatcac ... tttacacaagAAACTT-GCAACTGGGGAAATT-CTGCCAGCTGCTT
EST: CGAGGAGGCCCAAGAAGCTTACTGGAAGGCCAGGGGGCCGGCCCAGAAAG AAACTTGCAACGGGGGAAATTCTGCCAGTTGCTTCCGAACAACCAGTGGCAEST: gi|352777989|gb|FQ467042.1|FQ467042
genomic: CGAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGAAAGgtgagatcac ... tttacacaagAAACTTGCAACTGGGGAAATTCTGCCAGCTGCTTCCGAACAACCAGTGGCA
EST: CGAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGAAAG AAACTTGCAACTGGGGAAATTTTGCCAGCTGCTTCCGAACAACCAGTGGCA
genomic: CGAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGAAAGgtgagatcac ... tttacacaagAAACTTGCAACTGGGGAAATTCTGCCAGCTGCTTCCGAACAACCAGTGGCA
tattgtgctgaacttgttctgattttatgtttggtgttccccttctttacacaagAAACTTGCAACTGGGGAAATTCTGCCAGCTGCTTCCGAACAACCAGTGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATT
ttctgat putative branch site (score: 3)
tgttccccttctttac putative PPT
attttatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctgtgtgttgtaatgttgttatttttttctcttcatgggtatgtattgtgctgaacttgttctgattttatgtttggtgttccccttctttacacaagAAACTTGCAACTGGGGAAATTCTGCCAGCTGCTTCCGAACAACCAGTGGCAGAGTGGATGAACTACGAGGATCTTAAGCAAAAACTGGAGCACATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- -tgtgtgt
- - - - - - - - - - - - - - - - -ttcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - tgctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgg