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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttttttaattattatgcaaagtcctgttttatggttttaacatttcttgatttttgaggttgttttggtatgaagTTGGATCAAACTTATTACGTGATTGACATGGTGTGCTGGCGGGGATACTCTTTATATGACTGCACTGCTGAGTTCAGATTTTTTTGGGTGAACTCCAAGC

Basic information

species Vitis vinifera
transcript Vv17s0000g01420.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g01420.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA04G37160.1 (Glycine max), 3'ss of exon 2
-----------gtaatttttttaattattatgcaaagtcctgttttatggttttaacatttcttgatttttgaggttg--ttttggtatga---agTTGGATCAAACTTATTACGTGATTGACATGGTGTGCTGGCGGGGATACTCTTTATATGACTGCACTGCTGAGTTCAGATTTTTTTGGGTGAACTCCAAGC
            || |||| |   |||||      | |   || || | |||||    ||| ||  | ||||    ||  ||||||  ||    ||  |||||||||||||||||| ||||||||||| || |||||||| ||| || | | ||| ||||| || ||||| || || || ||| ||| ||| ||||
gtctgaatttgctacttttctaggttattcgaatgaatgtcgtgtttttgttttctgttttttttttctttgtatgtgatttttggggtggcacagGCGGATCAAACTTATTACGTTATTGACATGGTTTGTTGGCGGGGTTACCCTCTGTCTGATTGCACCGCGGAGTTTAGGTTCTTCTGGTTGACCTCGAAGC

upper sequence: Vv17s0000g01420.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA06G17890.1 (Glycine max), 3'ss of exon 2
-----------------gtaattt-ttttaattattatgcaaagtcctgttttatggttttaacattt--cttgatttttgaggttgttttggtatgaagTTGGATCAAACTTATTACGTGATTGACATGGTGTGCTGGCGGGGATACTCTTTATATGACTGCACTGCTGAGTTCAGATTTTTTTGGGTGAACTCCAAGC
                  |   || ||||  || || |      | || ||| ||| || |    |||  |||  | | ||| |||   | |      || ||||||| ||||||||||| ||||||||||| || |||||||  ||| || | | ||| |||||||| ||||| || || || ||| ||| ||| ||||
taggttattcgaatgaaatgtcttgtttttttttttgtttgtttttctttttaatgtttgtgtgtttttgctttgtgtctgatgtttggtggtggcacagGTGGATCAGACTTATTACGTTATTGACATGGTTTGTTGGCGGGATTACCCTCTGTCTGATTGCACTGCGGAGTTTAGGTTCTTCTGGTTGACCTCGAAGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352791070|gb|FQ477397.1|FQ477397
EST:     TCTCTGGTTCTGCTCAATCATATTGTATTCTGGATTGCATATTTCATGAG                         TTGGATCAAACTTATTACGTGATTGACATGGTGTGCTGGCGGGGATACTCT
genomic: TCTCTGGTTCTGCTCAATCATATTGTATTCTGGATTGCATATTTCATGAGgtaatttttt ... tggtatgaagTTGGATCAAACTTATTACGTGATTGACATGGTGTGCTGGCGGGGATACTCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcctgttttatggttttaacatttcttgatttttgaggttgttttggtatgaagTTGGATCAAACTTATTACGTGATTGACATGGTGTGCTGGCGGGGATACTCTTTATATGACTGCACTGCTGAGTTCAGATTTTTTTGGGTGAACTCCAAGC
                                       ttgtttt  CT-rich tract
              ttttaacatttcttga  TA-rich tract