Sequence
atgc intronic sequence ATGC exonic sequence...atgggtctaaaattgcccttacatgtaaagtaaattaatctcctttttaggtattccttttatggttagctgcccattctcaatgtcttccctttcgcagGTCAAATGCTTTATGAAGCAATTACTCTCTGGGCTTGAGCATTGTCACAACCAAGGTGTTCTGCATCGAGATATCAAGGGTTCCAATCTGTTAATCAACA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g00620.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA06G17460.1 (Glycine max), 3'ss of exon 2
atgggtctaaaattgcccttacatgtaaagtaaattaatctcc---tttttaggtattccttttatggttagctgcccattctcaatgtcttccctttcgcagGTCAAATGCTTTATGAAGCAATTACTCTCTGGGCTTGAGCATTGTCACAACCAAGGTGTTCTGCATCGAGATATCAAGGGTTCCAATCTGTTAATCAACA
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---tattgacaggctaggaggaagatagagttattcaaattacaaagtaaaaggaaaactcatactgaaaggctgatttgtctctcagtatattctttgacagGTTAAATGCTTTATGAAGCAATTACTCTCTGGTCTTGAGCATTGTCACAGCCGGGGGGTGTTGCACCGTGATATCAAGGGCTCCAATCTGCTTATTGACA
upper sequence: Vv17s0000g00620.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA05G38410.1 (Glycine max), 3'ss of exon 2
---atgggtctaaaattgcccttacatgtaaagtaaattaatctcctttttaggtattccttttatggttagctgcccattctcaatgtcttccctttcgcagGTCAAATGCTTTATGAAGCAATTACTCTCTGGGCTTGAGCATTGTCACAACCAAGGTGTTCTGCATCGAGATATCAAGGGTTCCAATCTGTTAATCAACA
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tcagtaagaatagaagggaggaggagtctttcatatttaaaaatgaaaggataaaatgtactaaaaggctgattgt---ttctcagtatgttctttatgacagGTCAAATGCTATATGAAGCAATTGCTATCTGGCCTTGAGCATTGCCACAGCAGAGGTGTTTTGCACCGTGATATTAAGGGTTCCAATCTGCTTATTGACA
upper sequence: Vv17s0000g00620.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA04G37630.1 (Glycine max), 3'ss of exon 2
-------atgggtctaaaattgcccttacatgtaaagtaaattaatctcctttttaggtattccttttatggttagctgccc--attctcaatgtcttccctttcgcagGTCAAATGCTTTATGAAGCAATTACTCTCTGGGCTTGAGCATTGTCACAACCAAGGTGTTCTGCATCGAGATATCAAGGGTTCCAATCTGTTAATCAACA
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ttgacagattaggaggaagatagacttattcgtattacagagtaaa---------aggaaaactcatactgaaaggctgatttgtctctcagtatattctttatgacagGTTAAATGCTTTATGAAGCAATTACTATCTGGTCTTGAGCATTGCCACAGTCGAGGGGTGTTGCACCGTGATATCAAGGGTTCCAATCTGCTTATTGACA
upper sequence: Vv17s0000g00620.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G01250.1 (Glycine max), 3'ss of exon 2
---atgggtctaaaattgcccttacatgtaaagtaaattaatctcctttttaggtattccttttatggttagctgcccattctcaatgtcttccctttcgcagGTCAAATGCTTTATGAAGCAATTACTCTCTGGGCTTGAGCATTGTCACAACCAAGGTGTTCTGCATCGAGATATCAAGGGTTCCAATCTGTTAATCAACA
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tcagtaagaatagaagggaggaggagtctttcatatttaaaaatgtaagcataaaatgtactgaaaggctgattgt---ttctcagtatgttctttatgacagGTCAAATGCTATATGAAGCAATTGCTATCTGGCCTTGAGCATTGCCACAGCAGAGGTGTTTTGCACCGTGATATTAAGGGTTCAAATCTGCTTATTGACA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttaggtattccttttatggttagctgcccattctcaatgtcttccctttcgcagGTCAAATGCTTTATGAAGCAATTACTCTCTGGGCTTGAGCATTGTCACAACCAAGGTGTTCTGCATCGAGATATCAAGGGTTCCAATCTGTTAATCAACA
tgtcttccctttcgc CT-rich tract
ttttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atgggtctaaaattgcccttacatgtaaagtaaattaatctcctttttaggtattccttttatggttagctgcccattctcaatgtcttccctttcgcagGTCAAATGCTTTATGAAGCAATTACTCTCTGGGCTTGAGCATTGTCACAACCAAGGTGTTCTGCATCGAGATATCAAGGGTTCCAATCTGTTAATCAACA
- - - - - - -tgccctt
- - - - - - - - - - -catgtaa
- - - - - - - - - - - - - - - -aaattaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatgtc