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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagactcgctttcttgttcctcattctgtttctaccgctgaaaactttaggtgcagttttgttcatgacctcattgtattcatcgttcatttgtatgcactttatctattggcggtatgtctatgcattgagtgatatatctgtctgaggtggcatcttatacggttgtgctgtagGTTGAAGTTAGGGCAAGAGAGGGAAGAGCTGTAAACATCCACATGTTCTGTGGCCGCAGACCAGGTCTATTGCTCTCCACCATGAGGGCTCTGGACAGCC

Basic information

species Vitis vinifera
transcript Vv17s0000g00330.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g00330.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA04G37750.1 (Glycine max), 3'ss of exon 5
gtaagactcgctttcttgttcctcattctgtttctaccgctgaaaactttaggtgcagttttgttcatgacct--cattgtattcatcgttcatttgtatgcactttatctattggcggtatgtctatgcattgagtgatatatctgtctgaggtggcatcttatacggttgtgctgtagGTTGAAGTTAGGGCAAGAGAGGGAAGAGCTGTAAACATCCACATGTTCTGTGGCCGCAGACCAGGTCTATTGCTCTCCACCATGAGGGCTCTGGACAGCC
                                                                   || | |  || |    |||| |   |   ||    | ||| | |  |    |||||| |      |||  ||    | | |      ||  |||  || |  || | |  |||||||| ||| ||    | || ||||| || || ||||| |||||||| |||||||||| ||| ||||| |||||||| |||||||||||| |||| | ||
------------------------------------------------------------------ctggcttagcactaggctcatagg--agcagtcaagattttgtttgctattagtatgttt------tgatagaagcttttatt---aatgcaatc--atgcaattatac-atagGTTGAGGTTCGGCTGCGTGAAGGAAGGGCAGTTAACATACACATGTTTTGTGGCCGCAAACCTGGTCTGTTGCTCTCAACCATGAGGGCTATGGATAACC

upper sequence: Vv17s0000g00330.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA06G17330.1 (Glycine max), 3'ss of exon 4
gtaagactcgctttcttgttcctcattctgtttctaccgctgaaaactttaggtgcagttttgttcatgacctcattgtattcatcgttcatttgtatgcactttatctattggcggtatgtctatgcattgagtgata-tatctgtctgaggtggcatctt---atacggttgtgctgtagGTTGAAGTTAGGGCAAGAGAGGGAAGAGCTGTAAACATCCACATGTTCTGTGGCCGCAGACCAGGTCTATTGCTCTCCACCATGAGGGCTCTGGACAGCC
                                                                             || || |   |    |  || | ||   ||      || || ||| | |   | |  || || ||| ||| |   |  || | |    || |  || | |  |||||||| ||| ||    | || ||||| ||||| |||||||||||||| |||| |||||  ||  |||| |||||||| |||||||||||| |||| | ||
-----------------------------------------------------------------------------gttttaacactaggctcataggaacagcatg----agcagtttgtttgtcattaggatgttactatgtgtttatagaagcttttattaatgcaattatac-atagGTTGAGGTTCGGCTGCGCGAAGGAAGGGCTGTTAACATCCACATGTTTTGTGCCCGCAAGCCTAGTCTGTTGCTCTCAACCATGAGGGCTTTGGATAACC

upper sequence: Vv17s0000g00330.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA05G38530.1 (Glycine max), 3'ss of exon 2
gtaagactcgctttcttgttcctcattctgtttctaccgctgaaaactttaggtgcagttttgttcatgacctcattgtattcatcgttcatttgt-atgcactttatctattggcggtatgtctatgca-ttgagtgatatatctgtctgaggtggcatcttatacggttgtgctgtagGTTGAAGTTAGGGCAAGAGAGGGAAGAGCTGTAAACATCCACATGTTCTGTGGCCGCAGACCAGGTCTATTGCTCTCCACCATGAGGGCTCTGGACAGCC
                                                                        |||||  ||| |||  |  | | | |   |    || | |||  | |    | || || |||| |  | | | | | |    |||  ||        |        ||||||| ||| ||    | || ||||||| |||||||||||||||||| || | ||| | ||| || || |||||||| ||||||| |||||| |||| ||
-----------------------------------------------------------------------ttcatt--atttatcagtattatatgagataaagaatttcttgatgatgaaaccattcaattgaatagtttttttttttttt-tggtttcccgccaaat------acagGTTGAGGTTGGGTTGCGCGAAGGAAGAGGTGTAAACATCCACATGTTTTGCGACCGGAAACCCGGACTCTTGCTCTCTACCATGACGGCTCTCGACAACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgcattgagtgatatatctgtctgaggtggcatcttatacggttgtgctgtagGTTGAAGTTAGGGCAAGAGAGGGAAGAGCTGTAAACATCCACATGTTCTGTGGCCGCAGACCAGGTCTATTGCTCTCCACCATGAGGGCTCTGGACAGCC
           tgatatat  TA-rich tract