Sequence
atgc intronic sequence ATGC exonic sequence...agtggacttcaacccttgatgtgtaattgcattactttatgtattttttatgaacctttaattaaagaggagtgtttttttttttttttttggtccacagGTGGTCCCACAGCTTGAAAGCAGAGCAGGTGATAAGGCTTGAGAGAGACCACTCCAGTGTCTCCATCTCTACTGCTAACTGAGAAAGATTCTTCTTCCAT
Basic information
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttatgaacctttaattaaagaggagtgtttttttttttttttttggtccacagGTGGTCCCACAGCTTGAAAGCAGAGCAGGTGATAAGGCTTGAGAGAGACCACTCCAGTGTCTCCATCTCTACTGCTAACTGAGAAAGATTCTTCTTCCAT
ctttaat putative branch site (score: 4)
tgtttttttttttttt putative PPT
tttaattaaagaggag TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agtggacttcaacccttgatgtgtaattgcattactttatgtattttttatgaacctttaattaaagaggagtgtttttttttttttttttggtccacagGTGGTCCCACAGCTTGAAAGCAGAGCAGGTGATAAGGCTTGAGAGAGACCACTCCAGTGTCTCCATCTCTACTGCTAACTGAGAAAGATTCTTCTTCCAT
- - - - -caaccct
- - - - - - - - tgatgtg
- - - - - - - - - - - - - - - - - - - - - - - - tatgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aattaaa