ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
PPT, BS, UA-tract

Sequence

atgc intronic sequence ATGC exonic sequence

gtctttatattttacttacatcggaacttaggttgattcttaaatgtatgtacaatatacttattttgaatgagtgttattcatgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCATGGTTGGGTGTCATTTCTCATCCTTCTTTATTACAAGTTGCCTTTAAGGC

Basic information

species	Vitis vinifera
transcript	Vv16s0100g00360.t01
intron #	2
splice site	3'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: Vv16s0100g00360.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G32340.1 (Glycine max), 3'ss of exon 1

gtctttatattttacttacatcggaacttaggttg----attcttaaatgtatgtacaat-atacttattttgaatgagtgttattcatgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCATGGTTGGGTGTCATTTCTCATCCTTCTTTATTACAAGTTGCCTTTAAGGC
||  ||  ||  | ||   ||   |  ||   | |    | |  ||| | | | |    |  |  || |  ||      || |||  ||| | ||||||||||||  ||||||||||  |  |  ||||||||||||| || |||||||||||||| || ||| |||| ||| | || || ||||||||||| ||||
gttctttcatgattctcctatgaaaggttgaatggtattactgctaagtttgtttcggtttgtgattgtggtgtggatatgctatatatgatttcagGAACCTGTGGCTGTTGCTCTGTCTGCTGTCAATCTTGCTATACAGTTTCATGGTTGGGTATCCTTTTTCATTCTTGTGTACTATAAGTTGCCTTTGAGGC

upper sequence: Vv16s0100g00360.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA09G27200.1 (Glycine max), 3'ss of exon 1

gtctttatattttacttacatcggaacttaggt--tgattcttaaatgtatgtacaatatacttatt-ttgaatgag--tgttattcatgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCATGGTTGGGTGTCATTTCTCATCCTTCTTTATTACAAGTTGCCTTTAAGGC
||  ||  |     ||   ||   |  ||  ||  | || ||   |||| |||      | || ||| | |  ||    || |||  ||| | ||||||||||||  ||||||||||  |  |  |||||||||||||||| |||||||||||||| || ||| |||| ||| | || || |||||| |||| ||||
gttctttcacgaatctcctataaaaggttgagtggtaatgctgctatgtttgtttcggtttctgattgtagtgtggatatgctatatatgatttcagGAACCTGTGGCTGTTGCTCTGTCTGCCGTCAATCTTGCTATGCAGTTTCATGGTTGGGTATCTTTTTTCATTCTTGTGTACTATAAGTTGACTTTGAGGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|349819429|gb|FQ412323.1|FQ412323

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|351043645|gb|FQ451972.1|FQ451972

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|352798608|gb|FQ480633.1|FQ480633

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCC-TTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|352794419|gb|FQ481650.1|FQ481650

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCC-TTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|349818330|gb|FQ409105.1|FQ409105

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|351045110|gb|FQ449364.1|FQ449364

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|351048854|gb|FQ449722.1|FQ449722

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCCCTT-CTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|349818334|gb|FQ409109.1|FQ409109

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|351038013|gb|FQ460755.1|FQ460755

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|349817999|gb|FQ407988.1|FQ407988

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|349823340|gb|FQ402539.1|FQ402539

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|349809592|gb|FQ414482.1|FQ414482

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|352789874|gb|FQ478689.1|FQ478689

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCC-TTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|349818035|gb|FQ408024.1|FQ408024

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|349828273|gb|FQ416226.1|FQ416226

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|349821434|gb|FQ411055.1|FQ411055

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|349817351|gb|FQ405355.1|FQ405355

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|349813308|gb|FQ411548.1|FQ411548

EST:     CTGTCAAATATCAAGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTTAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|349818257|gb|FQ409032.1|FQ409032

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|351042391|gb|FQ442858.1|FQ442858

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCC-TTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|352786093|gb|FQ481888.1|FQ481888

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCC-TTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|349808974|gb|FQ406824.1|FQ406824

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|351034938|gb|FQ458295.1|FQ458295

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCC-TTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|71862086|gb|DT011141.1|DT011141

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|349822179|gb|FQ412443.1|FQ412443

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|351036803|gb|FQ457516.1|FQ457516

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|351051872|gb|FQ455286.1|FQ455286

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|349811218|gb|FQ406206.1|FQ406206

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTCTGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|351044833|gb|FQ449087.1|FQ449087

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|351032589|gb|FQ458954.1|FQ458954

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCCCTT-CTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|351016613|gb|FQ424040.1|FQ424040

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|349808119|gb|FQ403306.1|FQ403306

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|351055026|gb|FQ440365.1|FQ440365

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCC-TTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|351037018|gb|FQ460728.1|FQ460728

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|351044150|gb|FQ452823.1|FQ452823

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCC-TTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|351026218|gb|FQ428230.1|FQ428230

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|351036292|gb|FQ458667.1|FQ458667

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|349826321|gb|FQ416126.1|FQ416126

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|351012102|gb|FQ429908.1|FQ429908

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|351048352|gb|FQ449444.1|FQ449444

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|351053328|gb|FQ459196.1|FQ459196

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCC-TTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|351032587|gb|FQ458952.1|FQ458952

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCCCTT-CTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|349823832|gb|FQ415243.1|FQ415243

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|349811033|gb|FQ406021.1|FQ406021

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|351032920|gb|FQ461809.1|FQ461809

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCC-TTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|349812048|gb|FQ410845.1|FQ410845

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|351034656|gb|FQ458013.1|FQ458013

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|349816433|gb|FQ403808.1|FQ403808

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|351052622|gb|FQ452534.1|FQ452534

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|351052437|gb|FQ452470.1|FQ452470

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCC-TTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|351034232|gb|FQ463166.1|FQ463166

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|351057404|gb|FQ454086.1|FQ454086

EST:     CTGTCAAATATCAAGGAAAATGGCCATTCCGGCATGTATATGGAATTCAC                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|351035263|gb|FQ458620.1|FQ458620

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCC-TTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|351037639|gb|FQ462623.1|FQ462623

EST:     CTGTCAGATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|349818914|gb|FQ411609.1|FQ411609

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATTGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|351045033|gb|FQ449287.1|FQ449287

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|351032351|gb|FQ461604.1|FQ461604

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|351031804|gb|FQ460061.1|FQ460061

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|351054983|gb|FQ440322.1|FQ440322

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCC-TTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|352786420|gb|FQ479029.1|FQ479029

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCC-TTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|351041274|gb|FQ447401.1|FQ447401

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|351025283|gb|FQ434296.1|FQ434296

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|351055550|gb|FQ442346.1|FQ442346

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCC-TTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|349820599|gb|FQ404094.1|FQ404094

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|349811406|gb|FQ407632.1|FQ407632

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCCCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

EST: gi|349824465|gb|FQ413132.1|FQ413132

EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

tcttaaatgtatgtacaatatacttattttgaatgagtgttattcatgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCATGGTTGGGTGTCATTTCTCATCCTTCTTTATTACAAGTTGCCTTTAAGGC

                                              tgttctc  CT-rich tract
         tatgtacaatatactt  TA-rich tract

Data associated with selected splice site

Sequence

Basic information

Orthologous splice sites

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments