1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttgttgaaaatttggttgtaaagttgtttaattggtcttgttttaccactaccaagtgtttctctttgatctgaacgttgatcttttctaaactctgcagTGGCTGCTGTATTTAGCTTGGCTTACAAACTCCAACCTGCTATTATCTTCATTGATGAGGTTGATACTTTTTTGGGTCAGCGCCGGACAACAGACCATGA
species | Vitis vinifera |
transcript | Vv16s0098g01260.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGGATATCAAATTTAATGAGCAAATGGTTTGGTGATGCGCAAAAACTTG TGGCTGCTGTATTTAGCTTGGCTTACAAACTCCAACCTGCTATTATCTTCAEST: gi|32268094|gb|CD717253.1|CD717253
genomic: GAGGATATCAAATTTAATGAGCAAATGGTTTGGTGATGCGCAAAAACTTGgtgagtggaa ... aactctgcagTGGCTGCTGTATTTAGCTTGGCTTACAAACTCCAACCTGCTATTATCTTCA
EST: GAGGATATCAAATTTAATGAGCAAATGGTTTGGTGATGCGCAAAAACTTG TGGCTGCTGTATTTAGCTTGGCTTACAAACTCCAACCTGCTATTATCTTCAEST: gi|32247585|gb|CD713404.1|CD713404
genomic: GAGGATATCAAATTTAATGAGCAAATGGTTTGGTGATGCGCAAAAACTTGgtgagtggaa ... aactctgcagTGGCTGCTGTATTTAGCTTGGCTTACAAACTCCAACCTGCTATTATCTTCA
EST: GAGGATATCAAATTTAATGAGCAAATGGTTTGGTGATGCGCAAAAACTTG TGGCTGCTGTATTTAGCTTGNGCTTACAA-CTCCAACCTGCTATTATCTTC
genomic: GAGGATATCAAATTTAATGAGCAAATGGTTTGGTGATGCGCAAAAACTTGgtgagtggaa ... aactctgcagTGGCTGCTGTATTTAGCTTG-GCTTACAAACTCCAACCTGCTATTATCTTC
ccactaccaagtgtttctctttgatctgaacgttgatcttttctaaactctgcagTGGCTGCTGTATTTAGCTTGGCTTACAAACTCCAACCTGCTATTATCTTCATTGATGAGGTTGATACTTTTTTGGGTCAGCGCCGGACAACAGACCATGA
ttctaaa putative branch site (score: 2)
ttttctaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgttgaaaatttggttgtaaagttgtttaattggtcttgttttaccactaccaagtgtttctctttgatctgaacgttgatcttttctaaactctgcagTGGCTGCTGTATTTAGCTTGGCTTACAAACTCCAACCTGCTATTATCTTCATTGATGAGGTTGATACTTTTTTGGGTCAGCGCCGGACAACAGACCATGA
- - -gaaaatt
- - - - - - tggttgt
- - - - - - - - - - - - - - - - - - - - - - - cactacc