1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtcattatcaatttctatttttgctttattgttttttaattgatatattctacagaattttccttggattttatataagcatgtcaattggtgtaaatggatcttttttttacttcctttcttccttgtcttttttattccagATAAAGCTGGCAATCTGATGTATTTCAACAACCCGATGTGGCCTG
species | Vitis vinifera |
transcript | Vv16s0050g02670.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCATTCAACTGTTGTTTCTGGGTGGTTCTCAGAACCTCAGTCATGCTCTG ATAAAGCTGGCAATCTGATGTATTTCAACAACCCGATGTGGCCTGEST: gi|71872710|gb|DT021765.1|DT021765
genomic: CCATTCAACTGTTGTTTCTGGGTGGTTCTCAGAACCTCAGTCATGCTCTGgtcattatca ... tttattccagATAAAGCTGGCAATCTGATGTATTTCAACAACCCGATGTGGCCTG
EST: CCATTCAACTGTTGTTTCTGGGTGGTTCTCAGAACCTCAGTCATGCTCTG ATAAAGCTGGCAATCTGATGTATTTCAACAACCCGATGTGGCCTGEST: gi|161719336|gb|FC064840.1|FC064840
genomic: CCATTCAACTGTTGTTTCTGGGTGGTTCTCAGAACCTCAGTCATGCTCTGgtcattatca ... tttattccagATAAAGCTGGCAATCTGATGTATTTCAACAACCCGATGTGGCCTG
EST: CCATTCAACCGTTGTTTCTGGGTGGTTCTCAGAACCTCAGTCATGCTCTG ATAAAGCTGGCAATCTGATGTATTTCAACAACCCGATGTGGCCTG
genomic: CCATTCAACTGTTGTTTCTGGGTGGTTCTCAGAACCTCAGTCATGCTCTGgtcattatca ... tttattccagATAAAGCTGGCAATCTGATGTATTTCAACAACCCGATGTGGCCTG
tggtgtaaatggatcttttttttacttcctttcttccttgtcttttttattccagATAAAGCTGGCAATCTGATGTATTTCAACAACCCGATGTGGCCTG
tcttttttttacttcc CT-rich tract
atcttttttttactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcattatcaatttctatttttgctttattgttttttaattgatatattctacagaattttccttggattttatataagcatgtcaattggtgtaaatggatcttttttttacttcctttcttccttgtcttttttattccagATAAAGCTGGCAATCTGATGTATTTCAACAACCCGATGTGGCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG