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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcctttaatttctcactaagatatcggtctttaattggggaatcggtttttactttctctttctcaagaattagtatttacttgctgctaaatatgtttactttgatttagGGACTCCTTGAAGTGAAAGACAACTTACAAAAGGATTTGGGGAGAGAACCAACCGATGGGGAATTAGCAGAGGCCATGAGTATGAGTGCAGTTCAAGTAA

Basic information

species Vitis vinifera
transcript Vv16s0050g02520.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|329112374|gb|JG391842.1|JG391842
EST:     TTCCTTCCTCAGAGCATGCATGGCTATTCAAGCTAATGCAGCCCATGAAG                         GGACTCCTTGAAGTGAAAGAAAACTTACAAAAGGATTTGGGGAGAGAACCA
genomic: TTCCTCCCTCAGAGCATGCATGGCTATTCAAGCTAATGCAGCCCATGAAGgtgagccttt ... tttgatttagGGACTCCTTGAAGTGAAAGACAACTTACAAAAGGATTTGGGGAGAGAACCA
EST: gi|28964869|gb|CB343902.1|CB343902
EST:     TTCCTTCCTCAGAGCATGCATGGCTATTCAAGCTAATGCAGCCCATGAAG                         GGACTCCTTGAAGTGAAAGAAAACTTACAAAAGGATTTGGGGAGAGAACCA
genomic: TTCCTCCCTCAGAGCATGCATGGCTATTCAAGCTAATGCAGCCCATGAAGgtgagccttt ... tttgatttagGGACTCCTTGAAGTGAAAGACAACTTACAAAAGGATTTGGGGAGAGAACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctttctcaagaattagtatttacttgctgctaaatatgtttactttgatttagGGACTCCTTGAAGTGAAAGACAACTTACAAAAGGATTTGGGGAGAGAACCAACCGATGGGGAATTAGCAGAGGCCATGAGTATGAGTGCAGTTCAAGTAA
                                        tttacttt  CT-rich tract
                                taaatatgtttacttt  TA-rich tract