1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aattttgtatatgattactatcttccacaaaccaaatgtttacattgatatagaatggtgtcagtgtttgaagaagataatctttttcttcctcttacagGCCTCAGAAGAATTGGTACTTCCTGAAGACAAGAAGTGGCCATTCCTTCTCCGATATCCTATCTCATCTTTTGGTATCTGCCTTGGCATGAGCAGCCAAG
species | Vitis vinifera |
transcript | Vv16s0050g01860.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
tgatatagaatggtgtcagtgtttgaagaagataatctttttcttcctcttacagGCCTCAGAAGAATTGGTACTTCCTGAAGACAAGAAGTGGCCATTCCTTCTCCGATATCCTATCTCATCTTTTGGTATCTGCCTTGGCATGAGCAGCCAAG
cattgat putative branch site (score: 4)
taatctttttcttcct putative PPT
aagataatcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattttgtatatgattactatcttccacaaaccaaatgtttacattgatatagaatggtgtcagtgtttgaagaagataatctttttcttcctcttacagGCCTCAGAAGAATTGGTACTTCCTGAAGACAAGAAGTGGCCATTCCTTCTCCGATATCCTATCTCATCTTTTGGTATCTGCCTTGGCATGAGCAGCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - tcttcca
- - - - - - - - - - - - - -caaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaga