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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caccgttttcattagttttcctcatctatattttattagcaacaaaacgttggatcatgtttcatctatttcttatatgtgatattttgcatgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAATTGATGTTCCAAATCTGCAGGTGATTAAGTTGATGCAGAGCTTTAAGTC

Basic information

species Vitis vinifera
transcript Vv16s0050g01160.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g01160.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os02g34460.1 (Oryza sativa), 3'ss of exon 2
-caccgttttcattagttttcctcat-ctatattttattagc-aacaaaacgttggatcatgtttcatctatttcttatatgtgatattttgcatgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAATTGATGTTCCAAATCTGCAGGTGATTAAGTTGATGCAGAGCTTTAAGTC
  |       |||  || ||| || |  |     | || | | |  |  |  |||  ||   |||| ||  ||  || | ||   | |  |||||      |||||| ||||  || || ||||||||||||||| | |||||||||||  | |||||||| ||||| || ||||| || ||| | ||||||||||| |||||
ataataagaccatatgtcttcatcctatttcgactgatgaactagaaggatattgtttctcatttcttcatttgtttgtgtgcattgtggtgcat---catagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGATTGATGTGCCAAACCTTCAGGTCATCAAGCTCATGCAGAGCTTCAAGTC

upper sequence: Vv16s0050g01160.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os04g35090.1 (Oryza sativa), 3'ss of exon 2
caccgttttcattagtt--ttcctcatctatattttattagcaacaaaacgttggatcatgtttcatctatttcttatatgtgatattttgcatgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAATTGATGTTCCAAATCTGCAGGTGATTAAGTTGATGCAGAGCTTTAAGTC
| | |||    |  ||   | |  | |    ||   |  ||   ||||  |   |    |||     ||  || | |  ||   |||  ||  ||| ||||||||||||    ||||| |||||||||||||| || || || |||||  | || ||||| || || ||||||||||| ||| | ||||||||||| |||||
cgctgttggtgtatgtcagtacagcgttcgcatgccaagaggctcaaactgaaagtgattgtaggtgctggttttaacttggtgtatgctgt-tgt-tgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGATCGATGTGCCGAACCTGCAGGTGATCAAGCTCATGCAGAGCTTCAAGTC

upper sequence: Vv16s0050g01160.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os01g73160.1 (Oryza sativa), 3'ss of exon 2
caccgttttcattagttttcctcatctatattttattagcaacaaaacgttggatcatgtttcatctatttctt-atatgtga---tattttgcatgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAATTGATGTTCCAAATCTGCAGGTGATTAAGTTGATGCAGAGCTTTAAGTC
 ||   ||| ||| | ||   |||| ||| |  |    ||  |  || | |||  | | | |    |||   || |  ||  |   || ||    | | |||||||||||| |  ||||| |||||||||||||| || || || |||||  |  ||||||| || ||  || ||||||||||| | ||||||||||| |||||
-acatgttttatttgattgg-tcatgtatttgctgaaggc--ctgaatgatggtacctttatttgttatgagttgaagtgctaatttaattcaactatatgcagAGGGAGTCTTGTATGCCAAGAAGGACTACAACCTGGCCAAGCACCCAAAGGTTGATGTGCCCAACTTGGAGGTGATTAAGCTCATGCAGAGCTTCAAGTC

upper sequence: Vv16s0050g01160.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G065237_T01 (Zea mays), 3'ss of exon 2
caccgttttcattagttttcctcatctatattttattagcaacaaaac--gttggatcatgtttcatctatttcttata-tgtgatattttgcatgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAATTGATGTTCCAAATCTGCAGGTGATTAAGTTGATGCAGAGCTTTAAGTC
  ||   || ||| |    | | | ||||   ||  | |  | | |      ||  | |||||    | ||||||  || | |||| | ||   ||  ||||||||| ||    ||||| |||||||||||||| || || || |||||  | || ||||| || || || |||||||| ||| | |||||||||||||||||
-tccaaatttatttgccc-cttaaactatggattccttgttatacattcatctgcgttatgttcatacgatttctgttagtttgatgtatttgctgc-tgcagAGGGCGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGATCGATGTGCCCAACCTCCAGGTGATCAAGCTCATGCAGAGCTTTAAGTC

upper sequence: Vv16s0050g01160.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G050925_T01 (Zea mays), 3'ss of exon 2
caccgttttcattagttttcctcatctatattttatta-gcaacaaaacgt----tggatcatgtttcatctatttcttata-tgtgatattttgcatgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAATTGATGTTCCAAATCTGCAGGTGATTAAGTTGATGCAGAGCTTTAAGTC
      ||  ||   | | | ||| | | | || |            | ||    ||    |||||    |  |||||  || | |||| | ||   ||  ||||||||| ||    ||||| |||||||||||||| || || || |||||  | |||||||| || || || |||||||| ||| | ||||||||||| |||||
-----gttctatgtatatccatcaccgagaattgaaagcatggtctgatgtgatgtgtgctatgttcatacggtttctgttagtttgatgtgtttgctgc-tgcagAGGGCGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCACAGATTGATGTGCCCAACCTCCAGGTGATCAAGCTCATGCAGAGCTTCAAGTC

upper sequence: Vv16s0050g01160.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G171484_T01 (Zea mays), 3'ss of exon 2
----------------------------------------------------caccgttttcattagttttc----ctcatctatattttattagcaacaa-aacgtt-ggatcatgt----------ttcatctatttcttatatgtgatattttgca----tgtgt-gcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAATTGATGTTCCAAATCTGCAGGTGATTAAGTTGATGCAGAGCTTTAAGTC
                                                          ||||||||| |||     |  ||  | |  |||  ||||  |  ||  || ||||| |||            | ||  | ||||| ||     |   | ||    | ||| |||||||| |||   ||||| |||||||||||||| || || || |||||| |  |||| || || || ||| ||||||||||| | ||||||||||| |||||
gtgagctccttctcctccctcttcgcccgtccccctaggcgcgcccaatataagattatttcattagatttagataccaattcagacattacaagcattagcaatattcggatcgtgtacgacccaagcccgtccttgtcttagattgagaaccgttcaactttatgttgcagAGGGGGTTCTATATGCCAAGAAGGACTACAACCTGGCCAAGCACCCCAAGCTTGACGTGCCCAACCTGGAGGTGATTAAGCTCATGCAGAGCTTCAAGTC

upper sequence: Vv16s0050g01160.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G043737_T01 (Zea mays), 3'ss of exon 2
caccgttttcattagttttcctcatctatattttattagcaacaaaac--gttggatcatgtttcatctatttcttata-tgtgatattttgcatgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAATTGATGTTCCAAATCTGCAGGTGATTAAGTTGATGCAGAGCTTTAAGTC
  ||   || ||| |    ||| | ||||   ||  | |  | | |      ||  | |||||    | ||||||  || | |||| | ||   ||  ||||||||| ||    ||||| |||||||||||||| || || || |||||  | || ||||| || || || |||||||| ||| | |||||||||||||||||
-tccaaatttatttgccc-cctaaactatggattccttgttatacattcatctgcgttatgttcatgcgatttctgttagtttgatgtatttgctgc-tgcagAGGGCGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGATCGATGTGCCCAACCTCCAGGTGATCAAGCTCATGCAGAGCTTTAAGTC

upper sequence: Vv16s0050g01160.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EFJ29946 (Selaginella moellendorffii), 3'ss of exon 1
caccgttttcattagttttcctcatctatattttattagcaacaaaacgttggatcatgtttcatctatttcttatatgtgatattttgcatgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAATTGATGTTCCAAATCTGCAGGTGATTAAGTTGATGCAGAGCTTTAAGTC
                |      |||||  || |  | ||       || |    ||| | | |||      || |     ||  || |     | |||||||| ||   ||| || |||||||||||||||||  | || ||||| || || ||||| || ||||| |||||||| ||| | ||||||||||| |||||
---------------gtgaggggatctagcttctcctggcgcgctcgcgctcacgcatttctaatccgagatttctccccaattgttcg-----gcgcagAGGGCGTCCTCTACGCCAAGAAGGACTACAATCTCCCCAAGCACCCGGAGATCGATGTCCCCAATCTCCAGGTGATCAAGCTCATGCAGAGCTTCAAGTC

upper sequence: Vv16s0050g01160.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EFJ25099 (Selaginella moellendorffii), 3'ss of exon 1
caccgttttcattagttttcctcatctatattttattagcaacaaaacgttggatcatgtttcatctatttcttatatgtgatattttgcatgt------gtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAATTGATGTTCCAAATCTGCAGGTGATTAAGTTGATGCAGAGCTTTAAGTC
                                    |      |    | | |  ||| | ||   | ||||| ||  | ||| | |  |   |      | |||||||| ||   ||| || |||||||||||||||||  | || ||||| || || ||||| || ||||| |||||||| ||| | ||||||||||| |||||
-----------------------------------gtgaggggatctagctcgcgcatttctcccttttttctaatccgagatttctccccaattgttcggcgcagAGGGCGTCCTCTACGCCAAGAAGGACTACAATCTCCCCAAGCACCCGGAGATCGATGTCCCCAATCTCCAGGTGATCAAGCTCATGCAGAGCTTCAAGTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110416737|gb|EC982738.1|EC982738
EST:     GAGATCTCCAAGTACCTCTTCCAAG                         AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
genomic: GAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: gi|51051467|gb|CO819071.1|CO819071
EST:     A-TAT-CCCGAG-AGAATCGGAGAGAGAT-TCCAAGTACCTC-TCCAAG                         AGGGAG-TNGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
genomic: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: gi|110377465|gb|EC942530.1|EC942530
EST:     ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG                         AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
genomic: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: gi|110715571|gb|EE093772.1|EE093772
EST:     ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG                         AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
genomic: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: gi|110700496|gb|EE078604.1|EE078604
EST:     ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG                         AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
genomic: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: gi|71868077|gb|DT017132.1|DT017132
EST:     ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG                         AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
genomic: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: gi|110702044|gb|EE080304.1|EE080304
EST:     ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG                         AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
genomic: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: gi|110416841|gb|EC982847.1|EC982847
EST:     GAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG                         AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
genomic: GAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: gi|110703760|gb|EE080890.1|EE080890
EST:     ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG                         AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
genomic: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: gi|110398785|gb|EC965259.1|EC965259
EST:     ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG                         AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
genomic: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: gi|34364255|gb|CF405840.1|CF405840
EST:     GAGAGATCTCCAA-TACCTCTTCCAAG                         AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
genomic: GAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: gi|110360451|gb|EC923562.1|EC923562
EST:     ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG                         AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
genomic: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: gi|110363287|gb|EC926864.1|EC926864
EST:     GAGATCTCCAAGTACCTCTTCCAAG                         AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
genomic: GAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: gi|110692204|gb|EE071178.1|EE071178
EST:     ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG                         AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
genomic: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: gi|110723368|gb|EE100598.1|EE100598
EST:     ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG                         AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
genomic: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: gi|87584250|gb|DY473484.1|DY473484
EST:     ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG                         AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
genomic: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: gi|30320459|gb|CD003721.1|CD003721
EST:     ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG                         AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
genomic: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: gi|29781884|gb|CB346698.2|CB346698
EST:     ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG                         AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
genomic: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: gi|18458561|gb|BM436839.1|BM436839
EST:     ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG                         AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
genomic: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: gi|110722253|gb|EE098322.1|EE098322
EST:     ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG                         AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
genomic: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: gi|32268119|gb|CD717278.1|CD717278
EST:     ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG                         AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
genomic: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: gi|110401412|gb|EC968022.1|EC968022
EST:     ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG                         AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
genomic: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: gi|37189321|gb|CF608670.1|CF608670
EST:     ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG                         AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
genomic: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: gi|110692508|gb|EE071834.1|EE071834
EST:     ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG                         AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
genomic: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacgttggatcatgtttcatctatttcttatatgtgatattttgcatgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAATTGATGTTCCAAATCTGCAGGTGATTAAGTTGATGCAGAGCTTTAAGTC
                     tatttcttatatgtga  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
caccgttttcattagttttcctcatctatattttattagcaacaaaacgttggatcatgtttcatctatttcttatatgtgatattttgcatgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAATTGATGTTCCAAATCTGCAGGTGATTAAGTTGATGCAGAGCTTTAAGTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - -cctcatc
- - - - - - - - - - - - - - - - - - - - aacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - gatcatg