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...aattttgtttattcaccagtcataatcgtactgtcgtcttattgtttatatatttttgtcgctattgcttgtgtactgtgcttacttgatccaataacagGATGAATCGGCATACCCCCTTATTGAAGTTTTGCCATCATATGGAGTGGGAAGAGATGGAGGTGGAAGGCATAGTAGCCTTATTTTTGGAACGAACCTCA
species | Vitis vinifera |
transcript | Vv16s0050g01110.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCCATTTCACTCTTTATATCGATAAGGATGCTGTTATTCTTGGAGCCCAG GATGAATCGGCATACCCCCTTATTGAAGTTTTGCCATCATATGGAGTGGGAEST: gi|294966064|gb|GW837431.1|GW837431
genomic: GCCATTTCACTCTTTATATCGATAAGGATGCTGTTATTCTTGGAGCCCAGgtctggttct ... ccaataacagGATGAATCGGCATACCCCCTTATTGAAGTTTTGCCATCATATGGAGTGGGA
EST: GCCATTTCACTCTTTATATCGATAAGGATGCTGTTATTCTTGGAGCCAAG GATGAATCGGCATACCCCCTTATTGAAGTTTTGCCATCATATGGAGTGGGAEST: gi|161721296|gb|FC070042.1|FC070042
genomic: GCCATTTCACTCTTTATATCGATAAGGATGCTGTTATTCTTGGAGCCCAGgtctggttct ... ccaataacagGATGAATCGGCATACCCCCTTATTGAAGTTTTGCCATCATATGGAGTGGGA
EST: GCCATTTCACTCTTTATATCGATAAGGATGCTGTTATTCTTGGAGCCCAG GATGAATCGGCATACCCCCTTATTGAAGTTTTGCCATCATATGGAGTGGGAEST: gi|351014648|gb|FQ437650.1|FQ437650
genomic: GCCATTTCACTCTTTATATCGATAAGGATGCTGTTATTCTTGGAGCCCAGgtctggttct ... ccaataacagGATGAATCGGCATACCCCCTTATTGAAGTTTTGCCATCATATGGAGTGGGA
EST: GCCATTTCACTCTTTATATCGATAAGGATGCTGTTATTCTTGGAGCCCAG GATGAATCGGCATACCCCCTTATTGAAGTTTTGCCATCATATGGAGTGGGAEST: gi|37190160|gb|CF609509.1|CF609509
genomic: GCCATTTCACTCTTTATATCGATAAGGATGCTGTTATTCTTGGAGCCCAGgtctggttct ... ccaataacagGATGAATCGGCATACCCCCTTATTGAAGTTTTGCCATCATATGGAGTGGGA
EST: GCCATTTCACTCTTTATATCGATAAGGATGCTGTTATTCTTGGAGCCCAG GATGAATCGGCATACCCCCTTATTGAAGTTTTGCCATCATATGGAGTGGGAEST: gi|110698435|gb|EE075933.1|EE075933
genomic: GCCATTTCACTCTTTATATCGATAAGGATGCTGTTATTCTTGGAGCCCAGgtctggttct ... ccaataacagGATGAATCGGCATACCCCCTTATTGAAGTTTTGCCATCATATGGAGTGGGA
EST: GCCATTTCACTCTTTATATCGATAAGGATGCTGTTATTCTTGGAGCCCAG GATGAATCGGCATACCCCCTTATTGAAGTTTTGCCATCATATGGAGTGGGA
genomic: GCCATTTCACTCTTTATATCGATAAGGATGCTGTTATTCTTGGAGCCCAGgtctggttct ... ccaataacagGATGAATCGGCATACCCCCTTATTGAAGTTTTGCCATCATATGGAGTGGGA
ttatatatttttgtcgctattgcttgtgtactgtgcttacttgatccaataacagGATGAATCGGCATACCCCCTTATTGAAGTTTTGCCATCATATGGAGTGGGAAGAGATGGAGGTGGAAGGCATAGTAGCCTTATTTTTGGAACGAACCTCA
tatttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattttgtttattcaccagtcataatcgtactgtcgtcttattgtttatatatttttgtcgctattgcttgtgtactgtgcttacttgatccaataacagGATGAATCGGCATACCCCCTTATTGAAGTTTTGCCATCATATGGAGTGGGAAGAGATGGAGGTGGAAGGCATAGTAGCCTTATTTTTGGAACGAACCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - -ccagtca
- - - - - - - - - - - - - - tactgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttac