Sequence
atgc intronic sequence ATGC exonic sequence...ttcctaatagaatctttatcaaagtctgataagatgaccattactggaaccacgcataatcaaggcttccttctttttttctttttttgtatgatgatagTTCTCTTGCTTGGAGCACGGGTGGCAGCATCAGCAGCTCAAATTTCCGCAGCCGAAGAGAAGAAGGCATGGCTGATCTTAGCTTGGGTCAGCACTGTGGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0050g00780.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA10G37710.1 (Glycine max), 3'ss of exon 3
ttcctaatagaatctttatcaaagtctgataagatgaccattactggaaccacgcataatcaaggcttccttctttttttctttttttgtatgatgat--agTTCTCTTGCTTGGAGCACGGGTGGCAGCATCAGCAGCTCAAATTTCCGCAGCCGAAGAGAAGAAGGCATGGCTGATCTTAGCTTGGGTCAGCACTGTGGC
| | || | | |||| | | || || ||| || || | | | | || || | | | | | | | || ||||||||||||||||| | |||| ||||| ||||| ||| ||||||| ||| || |||||||||||||||||||| || ||||||| |||||| | |
tctgcactattctatccatcattatgaaagaatttggatcttat--gatacataactgttgagtattgactaaaattatcttgcatgtatgttgttatctagTTCTCTTGCTTGGAGGAAGGGTAGCAGCCTCAGCTGCTGCAATTTCCAAAGCAGATGAGAAGAAGGCATGGCTGATATTGGCTTGGGCCAGCACCATATC
upper sequence: Vv16s0050g00780.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA09G24940.1 (Glycine max), 3'ss of exon 3
ttcctaatagaatc-tttatcaaagtctgataag-atgaccattactggaac-cacgcataatcaaggcttccttctttttttctttttttgtatgatgatagTTCTCTTGCTTGGAGCACGGGTGGCAGCATCAGCAGCTCAAATTTCCGCAGCCGAAGAGAAGAAGGCATGGCTGATCTTAGCTTGGGTCAGCACTGTGGC
|| | ||| || || ||||| || | | || || ||| | | || | | || || ||| | || | ||||||| |||||||||||| | || ||||| ||||| ||| ||||||| || || ||| ||||||||||||| |||||||||||||| ||||| | ||
-caacaacaaaatgacctagactagattgatatccatatttaccaagagagttcattttcaattgatgtatcacacaatctt-ctatttatacattttt-tagTTCTATTGCTTGGAGCAAGAGTTGCAGCCTCAGCGGCTGCAATTTCCAAAGGAGATGAGGAGAAGGCATGGCTAATCTTAGCTTGGGTTAGCACCATAGC
upper sequence: Vv16s0050g00780.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G30000.1 (Glycine max), 3'ss of exon 3
ttcctaatagaatctttatcaaagtctgataagatgaccattactggaaccacgcataatcaag-gcttccttctttttttctttttttgtatgatgatagTTCTCTTGCTTGGAGCACGGGTGGCAGCATCAGCAGCTCAAATTTCCGCAGCCGAAGAGAAGAAGGCATGGCTGATCTTAGCTTGGGTCAGCACTGTGGC
||| | || | | | | | || |||| | | | | ||| ||| | | | | | |||| || | | | | ||||||| |||||||||||| | || ||||| ||||| ||| ||||||| || || ||| ||| ||||||||| |||||||||||||| |||||| | ||
ttcttgtctaaactaccagtattttttttttttatatccatacttagcaagagccattttcatttgatgcatcacaatcttctattcatatgttttc-tagTTCTATTGCTTGGAGCAAGAGTTGCAGCCTCAGCTGCTGCAATTTCCAAAGGAGATGAGGAGAGGGCATGGCTAATCTTAGCTTGGGTTAGCACTATAGCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33407179|gb|CF212806.1|CF212806EST: TGCTGTTGTCATACTTGTCCTGTCAAATGTGGCTTCTAATGTACCAACCG TTCTCTTGCTTGGAGCACGGGTGGCAGCATCAGCAGCTCAAATTTCCGCAG
genomic: TGCTGTTGTCATACTTGTCCTGTCAAATGTGGCTTCTAATGTACCAACCGgtatgttgat ... atgatgatagTTCTCTTGCTTGGAGCACGGGTGGCAGCATCAGCAGCTCAAATTTCCGCAG
EST:
gi|110360567|gb|EC923780.1|EC923780EST: TGCTGTTGTCATACTTGTCCTGTCAAATGTGGCTTCTAATGTACCAACTG TTCTCTTGCTTGGAGCACGGGTGGCAGCATCAGCAGCTCAAATTTCCGCAG
genomic: TGCTGTTGTCATACTTGTCCTGTCAAATGTGGCTTCTAATGTACCAACCGgtatgttgat ... atgatgatagTTCTCTTGCTTGGAGCACGGGTGGCAGCATCAGCAGCTCAAATTTCCGCAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggaaccacgcataatcaaggcttccttctttttttctttttttgtatgatgatagTTCTCTTGCTTGGAGCACGGGTGGCAGCATCAGCAGCTCAAATTTCCGCAGCCGAAGAGAAGAAGGCATGGCTGATCTTAGCTTGGGTCAGCACTGTGGC
cttccttctttttttc CT-rich tract
ttctttttttcttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttcctaatagaatctttatcaaagtctgataagatgaccattactggaaccacgcataatcaaggcttccttctttttttctttttttgtatgatgatagTTCTCTTGCTTGGAGCACGGGTGGCAGCATCAGCAGCTCAAATTTCCGCAGCCGAAGAGAAGAAGGCATGGCTGATCTTAGCTTGGGTCAGCACTGTGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - -aatagaa
- - - - - - - - - -caaagtc
- - - - - - - - - - - - - -gataaga
- - - - - - - - - - - - - - - - - - -ccattac
- - - - - - - - - - - - - - - - - - - - - - - - -ccacgca