Sequence
atgc intronic sequence ATGC exonic sequencegtattataaaactacttgatcatagattcccatggtttttagaacttattttacagagtaatttttcttttatcagCACTGGCAGTGGAGATATTGATACCTCAACTGTGGTGAAGGCTGATTCAGACGGTTGTCTTCATGGAGCATCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0050g00490.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA10G37900.1 (Glycine max), 3'ss of exon 2
gtattataaaactacttgatcatagattcccat--ggtttttagaacttattt-----tacagagtaat-------ttttcttttatcagCACTGGCAGTGGAGATATTGATACCTCAACTGTGGTGAAGGCTGATTCAGACGGTTGTCTTCATGGAGCATCAG
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gtaggtagaagctaattgatgttggatttttatctgctatgtatcactgatttaccaataaataatgatagttttttttttttccaccagCACCGGGAGTGGAGATATTGATACCTCAAAGGTGGTGAAGGCTGATGCTGATGGTTGTATTTCTGGGGCTTCAG
upper sequence: Vv16s0050g00490.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA09G25250.1 (Glycine max), 3'ss of exon 2
---------------------------gtattataaaactacttgatcatagattcccatggtttttagaa-cttattt--tacagagtaatttttcttttatcagCACTGGCAGTGGAGATATTGATACCTCAACTGTGGTGAAGGCTGATTCAGACGGTTGTCTTCATGGAGCATCAG
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gtaaataaattgaaagtacttcattttggatatttagtttagctgatatttcttttgagtgtttattggtttcccaattaatatatggcactttttctttcctcagCACAGGGAGTGGTGATATTGATACCTCAAAGGTGGTGAAGGCCGATTCTGATGGTCGTATTTGTGGGGCATCAG
upper sequence: Vv16s0050g00490.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G30190.1 (Glycine max), 3'ss of exon 2
----------------------gtattataaaactacttgatcatagattcccatggtttttagaactt--attt--tacagagtaatttttcttttatcagCACTGGCAGTGGAGATATTGATACCTCAACTGTGGTGAAGGCTGATTCAGACGGTTGTCTTCATGGAGCATCAG
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gtaaatagattgaaaggactttattttggatatttagctgatatttctttctgagtgtgtactggtttcccaattaatatatggtacttttcctttcctcagCACAGGGAGTGGTGATATTGATACCTCAAAGGTGGTGAAGGCCGATTCTGATGGTCGTATTTGTGGTGCATCAG
upper sequence: Vv16s0050g00490.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA20G29920.1 (Glycine max), 3'ss of exon 2
gtattataaaactacttgatcatagattcccat--ggtttttagaacttattttacag--------agtaatttttcttttatcagCACTGGCAGTGGAGATATTGATACCTCAACTGTGGTGAAGGCTGATTCAGACGGTTGTCTTCATGGAGCATCAG
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gtaagtagaagctaattgatgctggatttttatctgctatgtataactgatttaccaataaataatgataattttttatccaccagCACCGGGAGTGGAAATATTGATACCTCAAAGGTGGTGAAGGCCAATGCTGATGGTTGTACTTCTGGGGCTTCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122691816|gb|EC983968.1|EC983968EST: TTACAAGTTACCTCAGACGGGAAACCGAAGATCCTTGATGTTCTTGATTG CACTGGCAGTGGAGATATTGATACCTCAACTGCGGTGAAGGCTGATTCAGA
genomic: TTACAAGTTACCTCAGACGGGAAACCGAAGATCCTTGATGTTCTTGATTGgtattataaa ... cttttatcagCACTGGCAGTGGAGATATTGATACCTCAACTGTGGTGAAGGCTGATTCAGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atagattcccatggtttttagaacttattttacagagtaatttttcttttatcagCACTGGCAGTGGAGATATTGATACCTCAACTGTGGTGAAGGCTGATTCAGACGGTTGTCTTCATGGAGCATCAG
tttttcttttatc CT-rich tract
ttattttacagagtaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtattataaaactacttgatcatagattcccatggtttttagaacttattttacagagtaatttttcttttatcagCACTGGCAGTGGAGATATTGATACCTCAACTGTGGTGAAGGCTGATTCAGACGGTTGTCTTCATGGAGCATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA