1 5' 3' | 2 5' 3' | 3 5' 3' |
...tttcacgcaaacaattccctttttaattctttgcttttgaacaagttttttttggcaatatttctccactaaatgatactttcttcatcatcatctctagGCCATGGCAAGCTTAATGGTGGAGTCCACCACTAAAATGCTAGACATATGGAGCAGTCTAGTTGGCACCGGCATGCCTGAAATCGATGTGGAAAGCGAAA
species | Vitis vinifera |
transcript | Vv16s0050g00480.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
ttttttttggcaatatttctccactaaatgatactttcttcatcatcatctctagGCCATGGCAAGCTTAATGGTGGAGTCCACCACTAAAATGCTAGACATATGGAGCAGTCTAGTTGGCACCGGCATGCCTGAAATCGATGTGGAAAGCGAAA
cactaaa putative branch site (score: 2)
ctttcttcatcatc putative PPT
aatatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcacgcaaacaattccctttttaattctttgcttttgaacaagttttttttggcaatatttctccactaaatgatactttcttcatcatcatctctagGCCATGGCAAGCTTAATGGTGGAGTCCACCACTAAAATGCTAGACATATGGAGCAGTCTAGTTGGCACCGGCATGCCTGAAATCGATGTGGAAAGCGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - aaacaat
- - - - - - - - ccctttt
- - - - - - - - - - - - - - - - - - - gaacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccactaa